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Report for CCDS20573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20573.1 Public Mus musculus 6 Fkbp4 23 108 98 CCDS HistoryNCBI Gene:14228Re-query CCDS DB by CCDS ID:20573.1Re-query CCDS DB by GeneID:14228See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032508.10 ENSMUSP00000032508.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032508.10Link to Ensembl Protein Viewer:ENSMUSP00000032508.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032508Re-query CCDS DB by Protein ID:ENSMUSP00000032508
Original member Current member NCBI NM_010219.4 NP_034349.1 Accepted alive Link to Nucleotide Sequence:NM_010219.4Link to Protein Sequence:NP_034349.1Re-query CCDS DB by Nucleotide ID:NM_010219Re-query CCDS DB by Protein ID:NP_034349Link to BLAST:NP_034349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034349.1 458 P30416 458 100% 0 0

Chromosomal Locations for CCDS 20573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128430776 128430880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128432422 128432661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128433106 128433291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128433526 128433609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128433703 128433793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128434305 128434461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128434752 128434872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128435714 128435856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128436570 128436714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128438406 128438510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGACCGCCGAGGAGATGAAGGCGGCGGAGAACGGGGCGCAGTCGGCGCCCCTGCCTCTCGAAGGAGTGG
ACATCAGCCCCAAACAGGACGAGGGCGTGCTCAAGGTCATCAAGAGAGAGGGTACAGGCACAGAGACACC
CATGATCGGGGACCGAGTCTTTGTCCACTACACTGGCTGGCTGCTAGATGGCACAAAGTTTGACTCCAGT
CTGGACCGCAAGGACAAATTCTCCTTTGACCTGGGAAAAGGGGAGGTCATCAAGGCTTGGGATATTGCTG
TGGCAACCATGAAAGTGGGGGAAGTGTGCCACATCACCTGCAAGCCAGAATATGCCTATGGCGCAGCAGG
CAGCCCTCCGAAGATCCCCCCCAACGCCACACTTGTATTTGAGGTGGAGCTGTTTGAGTTCAAAGGAGAA
GATCTTACAGAAGAAGAAGATGGCGGGATCATCCGCAGAATACGGACTCGGGGTGAAGGCTATGCCAGGC
CCAATGATGGTGCTATGGTGGAAGTGGCCCTGGAAGGCTACCACAAGGACCGCCTCTTTGACCAGCGGGA
GCTCTGCTTTGAAGTCGGGGAAGGGGAAAGTCTAGATCTGCCCTGTGGGCTGGAGGAGGCCATTCAGCGC
ATGGAGAAAGGAGAGCATTCCATCGTGTACCTCAAACCTAGCTATGCTTTTGGCAGTGTGGGGAAGGAGA
GGTTCCAGATCCCACCGCACGCTGAGCTGAGGTATGAAGTGCGGCTGAAGAGCTTTGAGAAGGCCAAGGA
GTCTTGGGAGATGAGCTCCGCGGAGAAGCTGGAGCAGAGCAACATAGTGAAAGAGAGGGGCACCGCGTAC
TTCAAGGAAGGCAAGTACAAGCAGGCGTTACTGCAGTACAAGAAGATCGTGTCTTGGCTAGAATACGAGT
CTAGCTTCTCCGGTGAGGAAATGCAAAAGGTCCATGCACTCCGACTGGCCTCACACCTCAATCTGGCCAT
GTGTCACCTGAAACTGCAGGCCTTCTCAGCTGCCATCGAAAGCTGCAACAAGGCCTTGGAGCTGGACAGC
AACAACGAGAAGGGCCTGTTTCGCCGGGGAGAGGCCCACCTGGCCGTGAATGACTTTGACCTGGCAAGAG
CTGACTTCCAAAAGGTCCTGCAGCTCTATCCCAGCAACAAAGCCGCCAAGACCCAGCTGGCTGTGTGCCA
GCAGCGGACCCGTAGGCAGCTCGCCCGGGAAAAGAAGCTCTATGCCAACATGTTTGAGAGGCTGGCTGAG
GAGGAGCACAAGGTGAAGGCAGAAGTGGCAGCAGGAGACCATCCCACTGATGCTGAGATGAAGGGTGAGC
GGAACAATGTGGCCGAGAACCAGTCTCGGGTGGAGACAGAAGCGTAG

Translation (458 aa):
MTAEEMKAAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSS
LDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPPKIPPNATLVFEVELFEFKGE
DLTEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLFDQRELCFEVGEGESLDLPCGLEEAIQR
MEKGEHSIVYLKPSYAFGSVGKERFQIPPHAELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAY
FKEGKYKQALLQYKKIVSWLEYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS
NNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAE
EEHKVKAEVAAGDHPTDAEMKGERNNVAENQSRVETEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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