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Report for CCDS39781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39781.1 Public Mus musculus 7 Zfp541 23 108 98 CCDS HistoryNCBI Gene:666528Re-query CCDS DB by CCDS ID:39781.1Re-query CCDS DB by GeneID:666528See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39781.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108509.1 ENSMUSP00000104149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108509.1Link to Ensembl Protein Viewer:ENSMUSP00000104149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108509Re-query CCDS DB by Protein ID:ENSMUSP00000104149
Original member Current member EBI ENSMUST00000209369.1 ENSMUSP00000147475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209369.1Link to Ensembl Protein Viewer:ENSMUSP00000147475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209369Re-query CCDS DB by Protein ID:ENSMUSP00000147475
Original member Current member NCBI NM_001099277.2 NP_001092747.1 Accepted alive Link to Nucleotide Sequence:NM_001099277.2Link to Protein Sequence:NP_001092747.1Re-query CCDS DB by Nucleotide ID:NM_001099277Re-query CCDS DB by Protein ID:NP_001092747Link to BLAST:NP_001092747.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092747.1 1363 Q0GGX2-1 1363 100% 0 0

Chromosomal Locations for CCDS 39781.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16071942 16072248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16076347 16076587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16077972 16079826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16081678 16081736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16082052 16082238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16082510 16082570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16082999 16083060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16083221 16083572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16089797 16089860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16090360 16090502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16090808 16090911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16092286 16092361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16092839 16092927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16095142 16095282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16095420 16095601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16095691 16095859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4092 nt):
ATGGAGCCATACAGTCTTGGGGAAGAGGGAGCACTTCCATCAGAAGGGCACCTCCCATCCTTCTCTGAAA
GTCAAGTGCTCAACTGCAGTGACACACTCAACCGGGACCTGGGCCCCAGCACACGGGACCTGCTCTACGC
TGGCTTAAGCGGTTTGGACCTTGACCCCAGTCTCTCCACATCTGATATGCCCAGTGAAGTGCTAGAGGAC
AATCTGGACACCCTGTCCCTATACTCGGGGAAGGACAGTGACTCTGTGAAGCTGCTGGAAGAATATGCAG
ACTCTGAGTCACAGACCTCCTTACAAGACCTGGGGCTGGGCGCACTCAAGGTGCCTAAAGAGGCTGATGA
AGGAGGCAGGGCCACTGGGAGTACAAGGAAAGGCAAGCGACAGCACAGTTCCCCTCAGAATCCACTCCTG
GACTGCAGCCTGTGTGGGAAAGTGTTCAGCAGCGCCAGTTCCCTGAGCAAGCATTACCTGACGCACAGCC
AGGAGAGAAAACACGTGTGCAAAGTCTGCAGCAAAGCCTTCAAGCGGCAGGACCACCTGACTGGGCACAT
GCTCACCCACCAGAAGACCAAGCCCTTTGTGTGCATTGAGCAAGGTTGCAGCAAGAGCTACTGTGACTAC
CGCTCGCTGCGCCGCCACTATGAAGTCCAGCATGGAGTATGCATCCTGAAGGAGACTCCACCAGAAGAGG
AGGCCTATGGGGACCCAACTCACAACCATGATGTGGCTAACCAGCCTCCACCCAGTGGCCTGAGGTCCCT
GGGGCCCCCAGAAGCTAGGTCCCCTGGCTCTGTCTTGCCCAACAGAGACCTCCTTCGCTGTATTGTGAGC
AGCATCGTCCACCAGAAGATTCCTTCTCCTGGCCCAGCAGTGGGGCCTTCTGATACTGAAGCAAGGAGCT
CAGCCTGTGCTTGCCCCACCTCACTGGGATCATCATCATGTACACCAGCCAGCACCCCAGTGGCCCTAGG
AACCCTGGGCTCTGAGATTCCTGAGGAAACTCATCCCCCACGGAAGGAAGCTGCCACCGAAGTGTTCACA
CCTGTCCAGTCAAGGGCAGCTGAGAATGGTGTCCCCGATCCACCAGAGTCAGAGTTGGAGTCAGAGTCTC
CACGGCTTCAACGGCCATCCTCCCTGGAAGGCTGGCCAGAGGGCAGCTCTCTGCCTGCCTGCCTGCCTCT
CTTCAGAGGCCACTCTGTCCCCTCAGGATCCCAGCCTTCCAGCCACAACTTCCAGTGGCTCCGGAACCTG
CCTGGCTGTCCCAAGAACAAAGGCAGCAATGTGTTTATGGTCCACAAGCCCCCTGCAGTGGCATCCCGGG
AGGGCTCTGAGGGAGGAGGCTCTGGACCCAGCAGCACCCCTACCTCAGTGGAGCCTTCACCCAGCCTGGG
CACCACCCAGGAGGAACTCTTGCCATTTCCTCCTGCACTACTAAAGGCCCCTGGTGAGGCCTCCAGTGAA
GTTCGGCAGGCAGCTGGGGAAGATGAAACCTGGGCTCCCAAAAAGTGCAAACCTGACTGTGAGTCATTCC
CATGGCAGAGCCCCACTGAGCTTGGGCTCCAAGATGCACAGAACCCAGGTGGGCTCCCCTCAGATGCCAC
GCCCCTCTTCCGGCAGCTGTTCATGAAGTCACAGGAGTCTCTAGTAAGCCATGAGCAGATGCAGGTGCTC
CAGATGATTGCCAAGTCCCAGCGGATCTTCTCCCATACTCAGGTGGCTACAGCCTCAGCCCAGAGACCAG
GGCCCGAGGGCAAGCAGTCCACTCTGAAGCCATTGCAGGGGCCATGGCCACCACAAACTCTGCCACCAGC
ACCCACTGTAGACTCTTTCCAGATAGGCCCTGGACACTCAGAGCCAGAAGGATCCCCAGTCCGCAGGAGG
AAAACTATGCCTGCGGTGTCCAGAGAAACATCTCCTGGTGGCCCTAGGCGAGACACAAAAGGAGGCCCCA
AAGTGGCCTCTGCACCACCATCCCTCACAGGGCCAGGCCTGCTCCCCTCCCGGAATCCAGACAGCTCTTC
ATTGGCCAAAGGGACATTGGACCTGGGGGACATTATCCCCAATGCAGGCTCAAGGCAGTCCCAGTTAGGT
GGAGATGAGCCAGCTGGAACCCAGCTGGTTGGGAAACAGGGGCAAGGAGAAAATGGCCTGGCTTCAGGGG
CCATGAGAGGTGAGAAGGGTCCAGCCTGCCCCCGAGGTGGAGGCTACAGGCTCTTCTCAGGGCACCCCAG
GGCCCAGAGATTCTCAGGTTTCCGGAAGGAGAAAGTGAAGATGGATGTGTGCTGTGCAGCTTCTCCCAGC
CAGGTGGCCATGGCCTCCTTTTCATCGGCTGGGCCTCTGGCAGATCCACCCAGAGACATGAAGTCCAAGC
TGACAATCTTCAACAGAATCCAGGGTGGAAACATTTACAGACTCCCCCATCCAGTGAAGGAAGAGAGCTT
GGCAGGCGGATGCCATCAGCCAAATGGGGGTCCCACAGACTGGATGGAGTCAAAGAGCACTTTTGTGTGC
AAGAATTGCAGCCAGATGTTTTACACCGAGAAAGGGCTGAGCAGCCACATGTGTTTCCATAGTGACCAGT
GGCCATCACCTCGAGGGAAGCAGGAGCAACAGGTGAAGGGGCAAATGGTGGCTTCTGTAAAAAGGAAGGC
TGGCAGGGAGGAAGGAGCAGTAGAAGATATGAAACGTCATTATGATTGCAGCAGCTCTGAGCCTCAGGAT
GTCACCATACTGAGTATGTTAGTCAGCTCTGGCTCATGTGGGGTGACACCTGTGGTTCTGTCCTCTCTTC
TTCAGGGACAAGAAAAAGATGGGGAAGAGAGAGACAGCAAGGAGAGCTGCCAGTACAGAAAGCGGAAGAA
GCGGCCCCAGCCCAAGGCCCTGTTTGCCCCTCCTGCACCCTCTGCCCTCGGGGAACCAGGCCCAGGAGGG
TGCCACCAGAGCTGCCTGCACTCTCCTGTGTTCCTGGTGGATCACCTCCTGAAGGGCTTGTTTCAGTGCT
CTCCCTACACACCACCGCCTATGCTTAGCCCGATTCGTGAGGGCTCTGGGCTGTACTTCAATACCCTCTG
CTCCACATCCAGGGCTGGGCCCCACCTTATCAGCCCTGTACTTGACCAAGTGGACAGCTCCTTTGGCATC
TGTGTGGTGAAGGATGACACTAAAATCAGCATCGAACCACATATCAACGTAGGAAGCAGATTTCAGGCGG
AGATCCCAGAACTGCAGGAGAGGCTGCTGGCCAGAGTGGATGAGAATGTAGCTTCTCTGGTCTGGAAGCC
ATGGGGAGATGTGATGACCAACCCAGAGACCCAGGACAGAGTGATGGAGCTCTGCAATGTAGCATGCTCC
AGTGTGATGCCAGGAGGGGGCACCAACCTGGAGCTTGCCCTGCACTGCCTGCATGATGCCCAGGGCAGTG
TTCAGGTTGCCCTGGAGACTCTGTTACTCAGAGGACCCCAGAAGCCCCGGACTCACCCACTGGCTGACTA
TCGATACACAGGTTCAGACATCTGGACCCCCATGGAGAAGAGGCTCTTCAAGAAGGCATTCTGTGCCCAC
AAGAAGGACTTTTACCTGATACACAAGATGATCCAGACTAAAAGTGTAGCACAGTGTGTCGAGTACTACT
ACATCTGGAAAAAGATGGTTAAGTTTGATTGTGGCCGAGCTCCTGGGCTGGAGAAGAGGGGCAGAAGAGA
GCTGGATGAAGTAGAAAGGACTGAAGACAAGGTGACTTGCAGCCCTCGAGAGAGACCTACCCACCGTCCA
ACTCCTGAGTTAAAGATAAAGACCAAGAGTTACAGGAGAGAGTCTATCCTTCACTCCAGCCCAAGTGCAG
CCCCCAAGCGCACTCCTGAGCCTCCAGGGAGTGTGGAGAGCCAGGGCGTGTTCCCTTGCAGAGAGTGTGA
GAGGGTGTTCGACAAGATCAAGAGTCGGAATGCCCACATGAAGCGCCACCGCCTCCAGGAGCATGTGGAA
CCCGTTAGGGTGAAGTGGCCTGTGAAGCCCTACCCACTGAAGGAGGAAGAGGAGGAGGAAGAAGAGGAGC
TGGGGGCCGACATGGGCCCCTTGCAGTGGTGA

Translation (1363 aa):
MEPYSLGEEGALPSEGHLPSFSESQVLNCSDTLNRDLGPSTRDLLYAGLSGLDLDPSLSTSDMPSEVLED
NLDTLSLYSGKDSDSVKLLEEYADSESQTSLQDLGLGALKVPKEADEGGRATGSTRKGKRQHSSPQNPLL
DCSLCGKVFSSASSLSKHYLTHSQERKHVCKVCSKAFKRQDHLTGHMLTHQKTKPFVCIEQGCSKSYCDY
RSLRRHYEVQHGVCILKETPPEEEAYGDPTHNHDVANQPPPSGLRSLGPPEARSPGSVLPNRDLLRCIVS
SIVHQKIPSPGPAVGPSDTEARSSACACPTSLGSSSCTPASTPVALGTLGSEIPEETHPPRKEAATEVFT
PVQSRAAENGVPDPPESELESESPRLQRPSSLEGWPEGSSLPACLPLFRGHSVPSGSQPSSHNFQWLRNL
PGCPKNKGSNVFMVHKPPAVASREGSEGGGSGPSSTPTSVEPSPSLGTTQEELLPFPPALLKAPGEASSE
VRQAAGEDETWAPKKCKPDCESFPWQSPTELGLQDAQNPGGLPSDATPLFRQLFMKSQESLVSHEQMQVL
QMIAKSQRIFSHTQVATASAQRPGPEGKQSTLKPLQGPWPPQTLPPAPTVDSFQIGPGHSEPEGSPVRRR
KTMPAVSRETSPGGPRRDTKGGPKVASAPPSLTGPGLLPSRNPDSSSLAKGTLDLGDIIPNAGSRQSQLG
GDEPAGTQLVGKQGQGENGLASGAMRGEKGPACPRGGGYRLFSGHPRAQRFSGFRKEKVKMDVCCAASPS
QVAMASFSSAGPLADPPRDMKSKLTIFNRIQGGNIYRLPHPVKEESLAGGCHQPNGGPTDWMESKSTFVC
KNCSQMFYTEKGLSSHMCFHSDQWPSPRGKQEQQVKGQMVASVKRKAGREEGAVEDMKRHYDCSSSEPQD
VTILSMLVSSGSCGVTPVVLSSLLQGQEKDGEERDSKESCQYRKRKKRPQPKALFAPPAPSALGEPGPGG
CHQSCLHSPVFLVDHLLKGLFQCSPYTPPPMLSPIREGSGLYFNTLCSTSRAGPHLISPVLDQVDSSFGI
CVVKDDTKISIEPHINVGSRFQAEIPELQERLLARVDENVASLVWKPWGDVMTNPETQDRVMELCNVACS
SVMPGGGTNLELALHCLHDAQGSVQVALETLLLRGPQKPRTHPLADYRYTGSDIWTPMEKRLFKKAFCAH
KKDFYLIHKMIQTKSVAQCVEYYYIWKKMVKFDCGRAPGLEKRGRRELDEVERTEDKVTCSPRERPTHRP
TPELKIKTKSYRRESILHSSPSAAPKRTPEPPGSVESQGVFPCRECERVFDKIKSRNAHMKRHRLQEHVE
PVRVKWPVKPYPLKEEEEEEEEELGADMGPLQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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