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Report for CCDS21572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21572.1 Public Mus musculus 7 Usp17lc 23 108 98 CCDS HistoryNCBI Gene:13532Re-query CCDS DB by CCDS ID:21572.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21572.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079348.3 ENSMUSP00000078323.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079348.3Link to Ensembl Protein Viewer:ENSMUSP00000078323.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079348Re-query CCDS DB by Protein ID:ENSMUSP00000078323
Original member Current member NCBI NM_010089.3 NP_034219.3 Accepted alive Link to Nucleotide Sequence:NM_010089.3Link to Protein Sequence:NP_034219.3Re-query CCDS DB by Nucleotide ID:NM_010089Re-query CCDS DB by Protein ID:NP_034219Link to BLAST:NP_034219.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034219.3 545 G5E8I7 545 100% 0 0

Chromosomal Locations for CCDS 21572.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103416718 103416745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 103417528 103419137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGGTGGTTTCTCTTTCCTTCCCAGAAGCAGATCCAGCCCTATCATCTCCTGGTGCCCAACAGCTGCATC
AGGATGAAGCTCAGGTAGTGGTGGAGCTAACTGCCAATGACAAGCCCAGTCTGAGTTGGGAATGTCCCCA
AGGACCAGGATGCGGGCTTCAGAACACAGGCAACAGCTGCTACCTGAATGCAGCCCTGCAGTGCTTGACA
CACACACCACCTCTAGCTGACTACATGCTGTCCCAGGAGTACAGTCAAACCTGTTGTTCCCCAGAAGGCT
GTAAGATGTGTGCTATGGAAGCCCATGTAACCCAGAGTCTCCTGCACTCTCACTCGGGGGATGTCATGAA
GCCCTCCCAGATTTTGACCTCTGCCTTCCACAAGCACCAGCAGGAAGATGCCCATGAGTTTCTCATGTTC
ACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCACAGACAATCAGAACCCACCTCTGAGGACAGCT
CACCCATTCATGACATATTTGGAGGCTTGTGGAGGTCTCAGATCAAGTGTCTCCATTGCCAGGGTACCTC
AGATACATATGATCGCTTCCTGGATGTCCCCCTGGATATCAGCTCAGCTCAGAGTGTAAATCAAGCCTTG
TGGGATACAGAGAAGTCAGAAGAGCTACGTGGAGAGAATGCCTACTACTGTGGTAGGTGTAGACAGAAGA
TGCCAGCTTCCAAGACCCTGCATATTCATAGTGCCCCAAAGGTACTCCTGCTAGTGTTAAAGCGCTTCTC
GGCCTTCATGGGTAACAAGTTGGACAGAAAAGTAAGCTACCCAGAGTTCCTTGACCTGAAGCCATACCTG
TCCCAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTATGCTGTCCTGGTCCATGAAGGTGCGACTTGTC
ACAGTGGACATTACTTCTCTTATGTCAAAGCCAGACATGGGGCATGGTACAAGATGGATGATACTAAGGT
CACCAGCTGCGATGTGACTTCTGTCCTGAATGAGAATGCCTATGTGCTCTTCTATGTGCAGCAGACTGAC
CTCAAACAGGTCAGTATTGACATGCCAGAGGGCAGAGTACATGAGGTTCTCGACCCTGAATACCAGCTGA
AGAAATCCCGGAGAAAAAAGCATAAGAAGAAAAGCCCTTGCACAGAAGATGCGGGAGAGCCCTGCAAAAA
CAGGGAGAAGAGAGCAACCAAAGAAACCTCCTTAGGGGAGGGGAAAGTGCTTCAGGAAAAGAACCACAAG
AAAGCTGGGCAGAAACATGAGAATACCAAACTTGTGCCTCAGGAACAGAACCACCAGAAACTTGGGCAGA
AACACAGGATCAATGAAATCTTGCCTCAGGAACAGAACCACCAGAAAGCTGGGCAGAGCCTCAGGAACAC
GGAAGGTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCTGCTCAGATCCACAGAAAACTGGGGC
AGGGATGCTCCAGACAAGGAGAATCAACCCTGGCACAATGCTGACAGGCTCCTCACCTCTCAGGACCCTG
TGAACACTGGGCAGCTCTGTAGACAGGAAGGAAGACGAAGATCAAAGAAGGGGAAGAACAAGAACAAGCA
AGGGCAGAGGCTTCTGCTTGTTTGCTAG

Translation (545 aa):
MVVSLSFPEADPALSSPGAQQLHQDEAQVVVELTANDKPSLSWECPQGPGCGLQNTGNSCYLNAALQCLT
HTPPLADYMLSQEYSQTCCSPEGCKMCAMEAHVTQSLLHSHSGDVMKPSQILTSAFHKHQQEDAHEFLMF
TLETMHESCLQVHRQSEPTSEDSSPIHDIFGGLWRSQIKCLHCQGTSDTYDRFLDVPLDISSAQSVNQAL
WDTEKSEELRGENAYYCGRCRQKMPASKTLHIHSAPKVLLLVLKRFSAFMGNKLDRKVSYPEFLDLKPYL
SQPTGGPLPYALYAVLVHEGATCHSGHYFSYVKARHGAWYKMDDTKVTSCDVTSVLNENAYVLFYVQQTD
LKQVSIDMPEGRVHEVLDPEYQLKKSRRKKHKKKSPCTEDAGEPCKNREKRATKETSLGEGKVLQEKNHK
KAGQKHENTKLVPQEQNHQKLGQKHRINEILPQEQNHQKAGQSLRNTEGELDLPADAIVIHLLRSTENWG
RDAPDKENQPWHNADRLLTSQDPVNTGQLCRQEGRRRSKKGKNKNKQGQRLLLVC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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