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Report for CCDS29162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29162.1 Public Mus musculus 18 Wdr55 23 108 98 CCDS HistoryNCBI Gene:67936Re-query CCDS DB by CCDS ID:29162.1Re-query CCDS DB by GeneID:67936See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049323.8 ENSMUSP00000039010.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049323.8Link to Ensembl Protein Viewer:ENSMUSP00000039010.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049323Re-query CCDS DB by Protein ID:ENSMUSP00000039010
Original member Current member NCBI NM_026464.3 NP_080740.2 Accepted alive Link to Nucleotide Sequence:NM_026464.3Link to Protein Sequence:NP_080740.2Re-query CCDS DB by Nucleotide ID:NM_026464Re-query CCDS DB by Protein ID:NP_080740Link to BLAST:NP_080740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080740.2 388 Q9CX97 388 100% 0 0

Chromosomal Locations for CCDS 29162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36760287 36760480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36761977 36762077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36762166 36762253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36762355 36762534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36762658 36762757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36762849 36763018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36763092 36763425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGACCCCACGTGTGAAGAGAGTCCTGCAGAGGACTCAAACAATGAAGAGGAAGACCTTGACTCCACGA
AGGCAGCACCCCGGATCCGTGATACCCCAGAAGACATCGTGCTGGAAGCCCCAGCCAGTGGCCTGGCGTT
CCATCCGACTCGAGATCTGCTGGCAGCAGGGGACGTGGACGGAGATGTGTTCGTCTTTGCCTACTCTTGT
CAGGAGGGAGAAACCAAGGAACTCTGGTCCTCAGGACACCACCTCAAGTCCTGCCGGGCTGTTGTCTTCT
CAGAGGATGGGCAGAAACTTGTTACCGTCTCTAAGGACAAAGCAATCCACATCTTAGATGTCGAACAGGG
ACAATTGGAAAGGCGAATTTCCAAGGCCCACAGTGCCCCCATTAACAGTGTGCTGCTTGTGGATGAGAAT
GCTCTGGTTACGGGGGACGACACTGGTGGCATCCGGCTATGGGACCAGCGTAAAGAGGGCCCTTTGATGG
ATATGCGGCAGCATGAGGAGTACATTGCCGACATGGCTCTAGACCCAGCCAAAAAGCTGCTGCTGACAGC
CAGTGGGGATGGCTGCCTTGGTGTCTTCAACATCAAGAGACGCCGGTTTGAGTTACTCTCAGAGCCTCAG
TCAGGAGATCTAACCTCCGTCGCCCTCATGAAATACGGGAAGAAGGTGGCCTGTGGATCTAGCGAGGGGA
CCATCTACCTCTTCAACTGGAATGGTTTTGGGGCTACAAGTGACCGCTTTGCCCTGAGAGCAGAGTCCAT
CGACTGCATAGTTCCAGTCACTGAGAATCTGTTGTGCACTGGCTCCACGGATGGAATCATCAGGGCTGTG
AACATCCTGCCAAACCGAGTGGTAGGTACCGTGGGCCAGCATGCCGGGGAGCCTGTGGAGGCGCTAGCCC
TATCCCATTGCGGCCACTTTCTGGCCAGTAGTGGCCACGACCAGCGCCTCAAGTTTTGGGACATGACTCA
GCTTCGAACCGTGGTTGTGGATGACTATCGGCGACGCAAGAAAAAGGGAGGGCCGCTTCGTGCCCTGAGC
AGTAAGGCTTGGAGCACGGACGACTTCTTTGCAGGGTTGAGGGAAGATGAAGAGGATGCCAAGGCTCCAG
AGGAGGTGGTGAGGGAGAGCGATGACGATGACGACGACAGTGACTGA

Translation (388 aa):
MDPTCEESPAEDSNNEEEDLDSTKAAPRIRDTPEDIVLEAPASGLAFHPTRDLLAAGDVDGDVFVFAYSC
QEGETKELWSSGHHLKSCRAVVFSEDGQKLVTVSKDKAIHILDVEQGQLERRISKAHSAPINSVLLVDEN
ALVTGDDTGGIRLWDQRKEGPLMDMRQHEEYIADMALDPAKKLLLTASGDGCLGVFNIKRRRFELLSEPQ
SGDLTSVALMKYGKKVACGSSEGTIYLFNWNGFGATSDRFALRAESIDCIVPVTENLLCTGSTDGIIRAV
NILPNRVVGTVGQHAGEPVEALALSHCGHFLASSGHDQRLKFWDMTQLRTVVVDDYRRRKKKGGPLRALS
SKAWSTDDFFAGLREDEEDAKAPEEVVRESDDDDDDSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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