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Report for CCDS27697.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27697.1 Public Mus musculus 15 Poldip3 23 108 98 CCDS HistoryNCBI Gene:73826Re-query CCDS DB by CCDS ID:27697.1Re-query CCDS DB by GeneID:73826See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27697.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058793.13 ENSMUSP00000054548.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058793.13Link to Ensembl Protein Viewer:ENSMUSP00000054548.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058793Re-query CCDS DB by Protein ID:ENSMUSP00000054548
Original member Current member NCBI NM_178627.4 NP_848742.1 Accepted alive Link to Nucleotide Sequence:NM_178627.4Link to Protein Sequence:NP_848742.1Re-query CCDS DB by Nucleotide ID:NM_178627Re-query CCDS DB by Protein ID:NP_848742Link to BLAST:NP_848742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848742.1 420 Q8BG81 420 100% 0 0

Chromosomal Locations for CCDS 27697.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 83127881 83128055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83129194 83129260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83131481 83131610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83132577 83132654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83133147 83133326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83135294 83135389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83137468 83137554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83138132 83138522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 83149195 83149253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCCGATCTCTCGCTGGACGAGCTCATCCGGAAGCGCGGGACGGCGGCCAAGGGACGGCTCAGTGTCA
GGCCAGGAATTGGAGGTGTCCGGTCTCGAGTTGGAATCCAGCATAGTCTTGTTAACCAGCCAGCTCGCAC
AGCCACCTTCCAGCAGAGATTTGACGCCCGACAGAAGATTGGGCTCTCAGATGCTCGGCTCAAGCTGGGT
GTCAAAGATGCCCGGGAAAAGCTTTTGCAGAAAGACGCCCGGTTTCGGATCAAAGGGAAAGTACAGGATG
CCAGGGAGATGCTGAACTCACGAAAGCAGCAGGGCACTGTGCCCCAGAAGCCCCGCCAGGTGGCTGATGC
CCGGGAGAAGATCAGCTTGAAGAGGAGATCCCCTGCTGCGTTCACAAGCCCGCCCATTGGGACTGTAACC
CCAGCTCTGAAGCTCACCAAAACTATCCAGGTTCCACAGCAAAAGGCCATGGTGCCACTTCATGCCCATC
CTGCTGGAATGAGGATCAATGTTGTCAATAACCACCAGGCTAAACAGAACTTGTATGACCTGGATGAAGA
TGATGACATTGTGGTGCCTGTCCCTCCCAAGCAGATGAAGTTTGCAGCCACGGGCAGCCTTGTTCACCAC
ATGACTGGACTGAGCAGTTCCAAGCTGTCCATGTCCAAGGCCCTCCCTCTCACAAAAGTGGTCCAGAATG
ATGCCTACACCGCTCCTGTTCTCCCCTCCTCTGTTCGAACCAAAGCCTTGACCAGCATGTCCCGGACGCT
GGTGAACAAGGAGGAGCCTCCCAAAGAGCTGCCGCCTGCTGAGCCTGTGCTTAGCCCCTTGGAAGGCACC
AAGATGACCGTGAATAATCTGCACCCCCGAGTCACAGAGGAGGACATAGTTGAGCTTTTCTGTGTGTGTG
GCGCTCTCAAGCGGGCTCGACTGGTCCATCCTGGGGTAGCAGAAGTTGTCTTCGTGAAGAAGGATGACGC
CATCACTGCTTATAAGAAGTACAATAACCGATGTCTGGATGGGCAACCTATGAAGTGCAACCTTCACATG
AATGGAAATGTCATCACCTCAGACCAACCCATCCTGCTGCGGTTGAGTGACAGCCCCTCAGTGAAAAAGG
AAAGCGAGCTGCCACGGAGGGGCAACCCTGCCTCTTCCAACCCTCCTGCCGAAGTGGACCCTGACACCGT
TCTCAGAGCGCTCTTCAAGTCCTCGGGGGCCTCTGTGACCACACAACCCACAGAATTCAAAATCAAACTT
TGA

Translation (420 aa):
MADLSLDELIRKRGTAAKGRLSVRPGIGGVRSRVGIQHSLVNQPARTATFQQRFDARQKIGLSDARLKLG
VKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQGTVPQKPRQVADAREKISLKRRSPAAFTSPPIGTVT
PALKLTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQNLYDLDEDDDIVVPVPPKQMKFAATGSLVHH
MTGLSSSKLSMSKALPLTKVVQNDAYTAPVLPSSVRTKALTSMSRTLVNKEEPPKELPPAEPVLSPLEGT
KMTVNNLHPRVTEEDIVELFCVCGALKRARLVHPGVAEVVFVKKDDAITAYKKYNNRCLDGQPMKCNLHM
NGNVITSDQPILLRLSDSPSVKKESELPRRGNPASSNPPAEVDPDTVLRALFKSSGASVTTQPTEFKIKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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