NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS33920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33920.1 Public Homo sapiens 3 CPN2 24 110 108 CCDS HistoryNCBI Gene:1370Re-query CCDS DB by CCDS ID:33920.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323830.4 ENSP00000319464.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323830.4Link to Ensembl Protein Viewer:ENSP00000319464.3Re-query CCDS DB by Nucleotide ID:ENST00000323830Re-query CCDS DB by Protein ID:ENSP00000319464
Original member Current member EBI ENST00000429275.1 ENSP00000402232.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429275.1Link to Ensembl Protein Viewer:ENSP00000402232.1Re-query CCDS DB by Nucleotide ID:ENST00000429275Re-query CCDS DB by Protein ID:ENSP00000402232
Original member Current member NCBI NM_001080513.4 NP_001073982.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080513.4Link to Protein Sequence:NP_001073982.3Re-query CCDS DB by Nucleotide ID:NM_001080513Re-query CCDS DB by Protein ID:NP_001073982Link to BLAST:NP_001073982.3
Original member Current member NCBI NM_001291988.2 NP_001278917.1 Accepted alive Link to Nucleotide Sequence:NM_001291988.2Link to Protein Sequence:NP_001278917.1Re-query CCDS DB by Nucleotide ID:NM_001291988Re-query CCDS DB by Protein ID:NP_001278917Link to BLAST:NP_001278917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073982.3 545 P22792 545 100% 0 0
NP_001278917.1 545 P22792 545 100% 0 0

Chromosomal Locations for CCDS 33920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 194341065 194342702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1638 nt):
ATGCTCCCTGGAGCCTGGCTGCTCTGGACCTCCCTCCTGCTCCTGGCCAGGCCTGCCCAGCCCTGTCCCA
TGGGTTGTGACTGCTTCGTCCAGGAGGTGTTCTGCTCAGATGAGGAGCTTGCCACCGTCCCACTGGACAT
CCCGCCATATACGAAAAACATCATCTTTGTGGAGACCTCGTTCACCACATTGGAAACCAGAGCTTTTGGC
AGTAACCCCAACTTGACCAAGGTGGTCTTCCTCAACACTCAGCTCTGCCAGTTTAGGCCGGATGCCTTCG
GGGGGCTGCCCAGGCTGGAGGACCTGGAGGTCACAGGCAGTAGCTTCTTGAACCTCAGCACCAACATCTT
CTCCAACCTGACCTCGCTGGGCAAGCTCACCCTCAACTTCAACATGCTGGAGGCTCTGCCCGAGGGTCTT
TTCCAGCACCTGGCTGCCCTGGAGTCCCTCCACCTGCAGGGGAACCAGCTCCAGGCCCTGCCCAGGAGGC
TCTTCCAGCCTCTGACCCATCTGAAGACACTCAACCTGGCCCAGAACCTCCTGGCCCAGCTCCCGGAGGA
GCTGTTCCACCCACTCACCAGCCTGCAGACCCTGAAGCTGAGCAACAACGCGCTCTCTGGTCTCCCCCAG
GGTGTGTTTGGCAAACTGGGCAGCCTGCAGGAGCTCTTCCTGGACAGCAACAACATCTCGGAGCTGCCCC
CTCAGGTGTTCTCCCAGCTCTTCTGCCTAGAGAGGCTGTGGCTGCAACGCAACGCCATCACGCACCTGCC
GCTCTCCATCTTTGCCTCCCTGGGTAATCTGACCTTTCTGAGCTTGCAGTGGAACATGCTTCGGGTCCTG
CCTGCCGGCCTCTTTGCCCACACCCCGTGCCTGGTTGGCCTGTCTCTGACCCATAACCAGCTGGAGACTG
TCGCTGAGGGCACCTTTGCCCACCTGTCCAACCTGCGTTCCCTCATGCTCTCATACAATGCCATTACCCA
CCTCCCAGCTGGCATCTTCAGAGACCTGGAGGAGTTGGTCAAACTCTACCTGGGCAGCAACAACCTTACG
GCGCTGCACCCAGCCCTCTTCCAGAACCTGTCCAAGCTGGAGCTGCTCAGCCTCTCCAAGAACCAGCTGA
CCACACTTCCGGAGGGCATCTTCGACACCAACTACAACCTGTTCAACCTGGCCCTGCACGGTAACCCCTG
GCAGTGCGACTGCCACCTGGCCTACCTCTTCAACTGGCTGCAGCAGTACACCGATCGGCTCCTGAACATC
CAGACCTACTGCGCTGGCCCTGCCTACCTCAAAGGCCAGGTGGTGCCCGCCTTGAATGAGAAGCAGCTGG
TGTGTCCCGTCACCCGGGACCACTTGGGCTTCCAGGTCACGTGGCCGGACGAAAGCAAGGCAGGGGGCAG
CTGGGATCTGGCTGTGCAGGAAAGGGCAGCCCGGAGCCAGTGCACCTACAGCAACCCCGAGGGCACCGTG
GTGCTCGCCTGTGACCAGGCCCAGTGTCGCTGGCTGAACGTCCAGCTCTCTCCTCAGCAGGGCTCCCTGG
GACTGCAGTACAATGCTAGTCAGGAGTGGGACCTGAGGTCGAGCTGCGGTTCTCTGCGGCTCACCGTGTC
TATCGAGGCTCGGGCAGCAGGGCCCTAG

Translation (545 aa):
MLPGAWLLWTSLLLLARPAQPCPMGCDCFVQEVFCSDEELATVPLDIPPYTKNIIFVETSFTTLETRAFG
SNPNLTKVVFLNTQLCQFRPDAFGGLPRLEDLEVTGSSFLNLSTNIFSNLTSLGKLTLNFNMLEALPEGL
FQHLAALESLHLQGNQLQALPRRLFQPLTHLKTLNLAQNLLAQLPEELFHPLTSLQTLKLSNNALSGLPQ
GVFGKLGSLQELFLDSNNISELPPQVFSQLFCLERLWLQRNAITHLPLSIFASLGNLTFLSLQWNMLRVL
PAGLFAHTPCLVGLSLTHNQLETVAEGTFAHLSNLRSLMLSYNAITHLPAGIFRDLEELVKLYLGSNNLT
ALHPALFQNLSKLELLSLSKNQLTTLPEGIFDTNYNLFNLALHGNPWQCDCHLAYLFNWLQQYTDRLLNI
QTYCAGPAYLKGQVVPALNEKQLVCPVTRDHLGFQVTWPDESKAGGSWDLAVQERAARSQCTYSNPEGTV
VLACDQAQCRWLNVQLSPQQGSLGLQYNASQEWDLRSSCGSLRLTVSIEARAAGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH