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Report for CCDS25163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25163.1 Public Mus musculus 11 Rasl10b 23 108 98 CCDS HistoryNCBI Gene:276952Re-query CCDS DB by CCDS ID:25163.1Re-query CCDS DB by GeneID:276952See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25163.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021022.9 ENSMUSP00000021022.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021022.9Link to Ensembl Protein Viewer:ENSMUSP00000021022.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021022Re-query CCDS DB by Protein ID:ENSMUSP00000021022
Original member Current member EBI ENSMUST00000108140.9 ENSMUSP00000103775.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108140.9Link to Ensembl Protein Viewer:ENSMUSP00000103775.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108140Re-query CCDS DB by Protein ID:ENSMUSP00000103775
Original member Current member EBI ENSMUST00000164425.1 ENSMUSP00000132696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164425.1Link to Ensembl Protein Viewer:ENSMUSP00000132696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164425Re-query CCDS DB by Protein ID:ENSMUSP00000132696
Original member Current member NCBI NM_001013386.3 NP_001013404.1 Accepted alive Link to Nucleotide Sequence:NM_001013386.3Link to Protein Sequence:NP_001013404.1Re-query CCDS DB by Nucleotide ID:NM_001013386Re-query CCDS DB by Protein ID:NP_001013404Link to BLAST:NP_001013404.1
Original member Current member NCBI NM_001361566.1 NP_001348495.1 Accepted alive Link to Nucleotide Sequence:NM_001361566.1Link to Protein Sequence:NP_001348495.1Re-query CCDS DB by Nucleotide ID:NM_001361566Re-query CCDS DB by Protein ID:NP_001348495Link to BLAST:NP_001348495.1
Original member Current member NCBI NM_001361568.1 NP_001348497.1 Accepted alive Link to Nucleotide Sequence:NM_001361568.1Link to Protein Sequence:NP_001348497.1Re-query CCDS DB by Nucleotide ID:NM_001361568Re-query CCDS DB by Protein ID:NP_001348497Link to BLAST:NP_001348497.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013404.1 203 Q5SSG5 203 100% 0 0
NP_001348495.1 203 Q5SSG5 203 100% 0 0
NP_001348497.1 203 Q5SSG5 203 100% 0 0

Chromosomal Locations for CCDS 25163.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83412619 83412834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83417852 83417976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83418560 83418830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGTCTCCACCTACCGGGTGGCCGTGCTGGGGGCTCGAGGTGTGGGCAAGAGTGCCATCGTGCGCCAAT
TCTTATACAACGAGTTCAGCGAGGTCTGTGTGCCCACCACCACCCGCCGCCTCTACCTGCCTGCTGTGGT
CATGAATGGCCATGTGCACGACCTGCAGATCCTGGACTTCCCACCCATCAGCGCCTTCCCTGTCAACACA
CTGCAGGAGTGGGCAGATGCCTGCTGCAGGGGACTCCGAAGCGTCCACGCCTACATCCTGGTCTATGACA
TCTGCTGCTTTGACAGCTTTGAGTACGTCAAGACTATCCGTCAGCAGATCCTGGAGACGAGGGTGATCGG
CACCTCGGAGACGCCCATCATCATCGTGGGCAACAAGCGCGACCTGCAACGCGGACGCGTGATTCCACGC
TGGAACGTGTCGCACTTGGTGCGCAAGACCTGGAAGTGCGGCTACGTGGAGTGCTCGGCCAAGTACAACT
GGCACATCCTGCTGCTCTTCAGCGAGCTGCTCAAGAGTGTGGGCTGCGCCCGCTGCAAACACGTGCACGC
TGCCCTGCGCTTCCAGGGAGCGCTGCGCCGCAACCGCTGCGCCATCATGTGA

Translation (203 aa):
MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTTRRLYLPAVVMNGHVHDLQILDFPPISAFPVNT
LQEWADACCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSETPIIIVGNKRDLQRGRVIPR
WNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCARCKHVHAALRFQGALRRNRCAIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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