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Report for CCDS20196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20196.1 Public Mus musculus 6 Herc3 23 108 98 CCDS HistoryNCBI Gene:73998Re-query CCDS DB by CCDS ID:20196.1Re-query CCDS DB by GeneID:73998See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041401.10 ENSMUSP00000040025.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041401.10Link to Ensembl Protein Viewer:ENSMUSP00000040025.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000041401Re-query CCDS DB by Protein ID:ENSMUSP00000040025
Original member Current member NCBI NM_001361966.1 NP_001348895.1 Accepted alive Link to Nucleotide Sequence:NM_001361966.1Link to Protein Sequence:NP_001348895.1Re-query CCDS DB by Nucleotide ID:NM_001361966Re-query CCDS DB by Protein ID:NP_001348895Link to BLAST:NP_001348895.1
Original member Current member NCBI NM_028705.3 NP_082981.3 Accepted alive Link to Nucleotide Sequence:NM_028705.3Link to Protein Sequence:NP_082981.3Re-query CCDS DB by Nucleotide ID:NM_028705Re-query CCDS DB by Protein ID:NP_082981Link to BLAST:NP_082981.3

Chromosomal Locations for CCDS 20196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 58843633 58843858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58854873 58855032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58855738 58855814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58856593 58856814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58857695 58857786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58858953 58859083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58860252 58860412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58862973 58863049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58868642 58868766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58870154 58870213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58873734 58873845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58874211 58874400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58876489 58876652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58876768 58876881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58884950 58884973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58885068 58885157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58887408 58887578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58888620 58888763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58890068 58890234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58894048 58894114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58894542 58894624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58916412 58916595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58916782 58916884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 58918713 58918921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3153 nt):
ATGTTATGTTGGGGGTATTGGTCTCTGGGCCAACCAGGCATCAGCTCCAACCTGCAAGGAATCGTGGCTG
AGCCCCAGGTGTGCCGCTTTGTATCGGACAGAAGCATCAAGGAAGTGGCGTGCGGAGGAAACCACTCCGT
GTTCCTGCTGGAGGACGGGGAGGTTTACACGTGTGGAGTAAACACCAAGGGGCAGCTTGGCCATGAGAGG
GAAGGTAACAAGCCAGAACAAATTGGAGCATTAGCTGATCAGCATATCATACACGTGGCATGTGGCGAGT
CACACAGTCTGGCTCTCAGTGACCGGGGTCAGCTGTTTTCTTGGGGTGCAGGAAGTGATGGCCAACTGGG
CCTCATGACTACTGAGGATTCCGTGGCTGTGCCCAGGCTAATCCAGAAACTGAACCAGCAGACCATATTA
CAAGTTTCCTGTGGCAACTGGCACTGCTTGGCTCTGGCAGCTGATGGCCAGTTCTTCACATGGGGGAAGA
ACAGCCATGGACAGCTGGGACTGGGGAAGGAGTTCCCCTCCCAAACCAGCCCACAGAGGGTGAGATCTTT
GGAAGGGATCCCGCTGGCTCAGGTGGCTGCAGGAGGGGCTCATAGCTTTGCCCTGTCTCTCTCGGGAGCT
GTTTTTGGCTGGGGAATGAATAATGCAGGGCAGCTAGGGCTCAGTGATGAAAAAGACCGGGAGTCTCCAT
GCCACGTGAAGCTTTTACGCACACAGAAAGTCGTCTATATTAGTTGTGGAGAGGAGCACACAGCAGTTCT
CACAAAGAGTGGGGGCGTGTTTACCTTTGGTGCTGGCTCCTGTGGGCAGCTTGGACATGACTCGGTGAAT
GATGAAGTTAATCCGAGAAGAGTCCTGGAGCTGATGGGCAGTGAAGTAACTCAGATTGCTTGTGGCAGAC
AGCACACTCTAGCCCTTGTGCCTTCTTCTGGACTCATCTATGCATTTGGTTGTGGAGCTAAAGGTCAGCT
GGGAACCGGACATACATGTAATGTCAAGTGCCCATCTCCTGTGAAGGGCCACTGGGCTGCCCACAGCAGT
CAGCTTTCAGCTCGCGCCGATCGCTTTAAGTATCGTGTCGTTAAGCAGATCTTCTCTGGAGGGGACCAGA
CTTTTGTACTTTGCTCCACGTATGAGAATTCTTCTCCTGCTGTTGACTTCAGAACTGTGAACCAAACACA
TTATACCAACTTAATAAATGATGAAACCATAGCAGTTTGGAGACAAAAACTCACAGAACACAACAACGCA
AATACTGTCAATGGTGTTGTTCAGATACTGTCTTCTGCAGCTTGTTGGAATGGAAGCTTTCTGGAAAAAA
AAATTGATGAACATTTTAAAACTAGTCCCAAAATCCCCGGGATTGACCTGAACTCAACTAGGATTTTATT
TGAGAAGTTAATGCACTCTCAGCACTCCATGATTCTAGAACAGATATTAAACAGCTTTGAAAGTTGCCTC
ATTCCCCAGTTATCAAGTTCACCCCCAGATGTGGAAGCAATGAGAATCTATTTAATCCTACCGGAGTTTC
CGCTGCTTCAGGACTCTAAGTATTACATAACGCTGACCATTCCCCTGGCAATGGCCATTCTGCGGCTGGA
AACAAACCCTAGCAAAGTATTAGATAACTGGTGGTCTCAGGCATGCCCCAAATATTTCATGAAGCTGGTA
ACCCTGTATAAAGGTGCCGTCCTTTACCTCCTAAGGGGAAGGAAGACATTCCTAATCCCGGTACTGTTTA
ACAACTACATGACTGCAACCCTCAAGCTTCTGGAGAAGTTGTACAAGGTAAATCTTAAGGTGAAGCATGT
GGAATACGATAAGTTTTATATCCCTGAGATTTCTAGTCTTGTGGACATTCAGGAAGACTACCTCATGTGG
TTTTTGCATCAATCTGGGATGAAGGCTAGACCCTCTATCATGCAGGATGCTGTAACCCTTTGTTCCTATC
CTTTCATCTTTGATGCCCAAGCTAAGACCAAGATGCTGCAGACTGATGCCGAGTTACAGATGCAGGTGGC
AGTCAATGGAGCCAACCTGCAGAATGTCTTCATGCTTCTTACCCTGGAGCCTCTGCTGGCCAGAAGCCCC
TTCCTGGTCCTCCATGTCCGTAGGAACCACCTTGTTGGAGATGCCCTGAGAGAGCTGAGCATTCACTCTG
ACATTGACTTGAAGAAGCCTCTCAAAGTAATCTTTGATGGGGAAGAAGGAGTAGATGCTGGTGGTGTTAC
GAAGGAGTTCTTTCTTTTGCTATTAAAAGAACTTTTGAATCCCATTTATGGGATGTTTACCTACTATCAA
GATTCAAATCTCTTGTGGTTTTCAGATACATGTTTTGTAGAGCACAACTGGTTTCACTTGATTGGCATAA
CCTGTGGATTAGCTATCTACAACTCCACTGTGGTTGACCTCCACTTCCCGTTGGCTCTCTACAAGAAGTT
ACTGAATGTAAAGCCCAGCTTGGAAGATTTGAAGGAACTGTCACCAACTGAAGGAAGGAGTCTTCAAGAG
CTTCTAGATTACCCCGGTGAAGACATCGAGGAGACCTTTTGCCTCAACTTCACGGTGTGCCGAGAAAGCT
ATGGGGTGATAGAACAGAAGAAGTTGATACCCGGGGGAGACAGAGTGGCCGTGTGCAAAGACAACAGGCA
AGAATTCGTGGACGCTTATGTGAATTACATCTTCCAAATTTCGGTTCACGAGTGGTACACAGCCTTCTCC
AGTGGCTTCCTAAAGGTGTGTGGTGGCAAAGTCCTCGAGCTCTTCCAGCCTGCAGAACTGAGGGCCATGA
TGGTGGGGAACAGCAACTATGACTGGGAAGAGCTGGAAGAGACTGCTGTCTACAGGGGTGATTATTCAAG
CACACATCCCACTGTGAAACTCTTCTGGGAGACATTCCACGAGTTCCCATTGGAGAAGAAGAAGAAGTTT
CTTTTGTTCCTAACAGGCAGTGACCGGATTCCCATCTATGGCATGGCCAGTCTTCAGATCATCATCCAGT
CCACAGCCACTGGGGAGGAATACTTACCCGTGGCCCATACCTGCTACAACCTTCTTGACCTCCCTAAGTA
TAGCAGCAAAGAGATCATGAAGGCTCGGCTGACCCAGGCCCTCGACAACTATGAGGGTTTTAGTTTGGCC
TGA

Translation (1050 aa):
MLCWGYWSLGQPGISSNLQGIVAEPQVCRFVSDRSIKEVACGGNHSVFLLEDGEVYTCGVNTKGQLGHER
EGNKPEQIGALADQHIIHVACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTIL
QVSCGNWHCLALAADGQFFTWGKNSHGQLGLGKEFPSQTSPQRVRSLEGIPLAQVAAGGAHSFALSLSGA
VFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQKVVYISCGEEHTAVLTKSGGVFTFGAGSCGQLGHDSVN
DEVNPRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAFGCGAKGQLGTGHTCNVKCPSPVKGHWAAHSS
QLSARADRFKYRVVKQIFSGGDQTFVLCSTYENSSPAVDFRTVNQTHYTNLINDETIAVWRQKLTEHNNA
NTVNGVVQILSSAACWNGSFLEKKIDEHFKTSPKIPGIDLNSTRILFEKLMHSQHSMILEQILNSFESCL
IPQLSSSPPDVEAMRIYLILPEFPLLQDSKYYITLTIPLAMAILRLETNPSKVLDNWWSQACPKYFMKLV
TLYKGAVLYLLRGRKTFLIPVLFNNYMTATLKLLEKLYKVNLKVKHVEYDKFYIPEISSLVDIQEDYLMW
FLHQSGMKARPSIMQDAVTLCSYPFIFDAQAKTKMLQTDAELQMQVAVNGANLQNVFMLLTLEPLLARSP
FLVLHVRRNHLVGDALRELSIHSDIDLKKPLKVIFDGEEGVDAGGVTKEFFLLLLKELLNPIYGMFTYYQ
DSNLLWFSDTCFVEHNWFHLIGITCGLAIYNSTVVDLHFPLALYKKLLNVKPSLEDLKELSPTEGRSLQE
LLDYPGEDIEETFCLNFTVCRESYGVIEQKKLIPGGDRVAVCKDNRQEFVDAYVNYIFQISVHEWYTAFS
SGFLKVCGGKVLELFQPAELRAMMVGNSNYDWEELEETAVYRGDYSSTHPTVKLFWETFHEFPLEKKKKF
LLFLTGSDRIPIYGMASLQIIIQSTATGEEYLPVAHTCYNLLDLPKYSSKEIMKARLTQALDNYEGFSLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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