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Report for CCDS20301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20301.1 Public Mus musculus 6 Nat8 23 108 98 CCDS HistoryNCBI Gene:68396Re-query CCDS DB by CCDS ID:20301.1Re-query CCDS DB by GeneID:68396See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032073.6 ENSMUSP00000032073.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032073.6Link to Ensembl Protein Viewer:ENSMUSP00000032073.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032073Re-query CCDS DB by Protein ID:ENSMUSP00000032073
Original member Current member NCBI NM_001362060.1 NP_001348989.1 Accepted alive Link to Nucleotide Sequence:NM_001362060.1Link to Protein Sequence:NP_001348989.1Re-query CCDS DB by Nucleotide ID:NM_001362060Re-query CCDS DB by Protein ID:NP_001348989Link to BLAST:NP_001348989.1
Original member Current member NCBI NM_023455.4 NP_075944.1 Accepted alive Link to Nucleotide Sequence:NM_023455.4Link to Protein Sequence:NP_075944.1Re-query CCDS DB by Nucleotide ID:NM_023455Re-query CCDS DB by Protein ID:NP_075944Link to BLAST:NP_075944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348989.1 227 Q9JIY7 227 100% 0 0
NP_075944.1 227 Q9JIY7 227 100% 0 0

Chromosomal Locations for CCDS 20301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85830466 85831149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCTTCTTTTCGCATCCGCCAGTTCCAGGAGAGGGACTACAAACAGGTCGTGGATGTGTTCTCCAGGG
GCATGGAGGAGCACATACCCACTGCCTTCCGCCACTTGCTGACACTGCCCCGAACCCTCCTGCTCTTAGC
TGTGGTGCCCCTTGCCATAGTCCTGGTGTCTGGCTCCTGGTTCCTGGCTGTTGTATGCATTTTCTTTCTG
TTCCTATTCTTGTGGTTCCTCGCCAGCAAGCCCTGGAAGAATTATGTGTCCAAATGTTTACACACAGACA
TGGCTGACATCACCAAGTCCTACCTGAGTGTCCGTGGCTCAGGTTTCTGGGTGGCTGAGTCTGGGGGGCA
GGTGGTGGGTACAGTGGCTGCTCGGCCAGTCAAGGATCCTCCGTTAGGGAGGAAGCAGCTGCAGCTCTTT
CGCCTGTCTGTGTCCTCACAGCATCGAGGACAGGGGATAGCGAAAGCGCTGACCAGAACTGTCCTCCAGT
TTGCAAGGGACCAGGGTTACAGTGATGTTGTCCTTGTGACTGGCCTTTTGCAGCAAGGTGCTGTGACTCT
CTACTACAGCATGGGCTTCCAGAAGACAGGTGAATCCTTCGTGGACATACTCACATGGCTTGTGGATGTT
TCTCTAATTCATTTCATATACCCACTCCCTTCTGCTCAAAAATATGAGTTGTGA

Translation (227 aa):
MASFRIRQFQERDYKQVVDVFSRGMEEHIPTAFRHLLTLPRTLLLLAVVPLAIVLVSGSWFLAVVCIFFL
FLFLWFLASKPWKNYVSKCLHTDMADITKSYLSVRGSGFWVAESGGQVVGTVAARPVKDPPLGRKQLQLF
RLSVSSQHRGQGIAKALTRTVLQFARDQGYSDVVLVTGLLQQGAVTLYYSMGFQKTGESFVDILTWLVDV
SLIHFIYPLPSAQKYEL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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