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Report for CCDS89387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89387.1 Public Mus musculus 19 Tbc1d12 23 108 98 CCDS HistoryNCBI Gene:209478Re-query CCDS DB by CCDS ID:89387.1Re-query CCDS DB by GeneID:209478See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000235558.1 ENSMUSP00000157901.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235558.1Link to Ensembl Protein Viewer:ENSMUSP00000157901.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235558Re-query CCDS DB by Protein ID:ENSMUSP00000157901
Original member NCBI NM_001362424.1 NP_001349353.1 Updated not alive Link to Nucleotide Sequence:NM_001362424.1Link to Protein Sequence:NP_001349353.1Re-query CCDS DB by Nucleotide ID:NM_001362424Re-query CCDS DB by Protein ID:NP_001349353
Current member NCBI NM_001362424.2 NP_001349353.1 Accepted alive Link to Nucleotide Sequence:NM_001362424.2Link to Protein Sequence:NP_001349353.1Re-query CCDS DB by Nucleotide ID:NM_001362424Re-query CCDS DB by Protein ID:NP_001349353Link to BLAST:NP_001349353.1

Chromosomal Locations for CCDS 89387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38836707 38837446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38865616 38865739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38882659 38882774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38895987 38896069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38907772 38907852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38911007 38911095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38913191 38913262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38913929 38914057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38914304 38914413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38916612 38916870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38917871 38917939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGATGGGTCCCGAGGATGCCGGAGCCTGCTCGGGAAGGAACGCCGAGCTGCTCCCAGTCCCGGGGCCCA
TGGGTCAGGACGGGAAGACCGTCCCGGCCACCAGCGGCTTTAGCGGAGGCGCTGTCGCCGCGGAGCCGCC
GGAGGAGGCTGGAGAGGAGGAGGCGCCGCCGCCGCGGCAGCTCCTGCAGCGGTACCTCGCGGCGGCCGCG
GGCCCGCTGAAGCCCGGGCTCGGCGGGGCGGAGGCGGAGGCGGAGGAGGCGGCGGCGGCAGCAGTCCCCG
CGGCGCGCGGCTCAGGCATGACCAACGGAGACTCGGGCTTTTTGCTGCGCCAGGACCGTCGCGGCCCAGA
GGAGGCACGTCGCCGCCGAACCTGCGGCCGTCCCTGCCTGCTGGAGCCCGCGGACGAGGGCGTGGACGGT
GCGGGTGGCCTGGACGACTGGGCCGCGCCGCTCGAGGACCCGCTGCGGAGCTGCTGCCTGGCGGCCGGGG
ACACGGACGACCCGGACCCCGCAGCCGCCACCCCTGCCGGGAGGGCCGTCGAGAGCGCGGAGCCCAGCCT
CGGCCTCCCCGACGCCCGCTTCGGCTCTCGGAACACGTTCGAGGTGAGCCGCCGTCAGAGCGCCGGCGAC
CTCCTGCCCTCAGCGGGGCCGTCCGCACCCTTGCCAGCGGCAGAGCAGGGTCCCGGGGGCACCACGGCTC
GGGCTCGACGGAGCGGTGGCTTCGCGGATTTCTTCGCCAGAAACCTTTTCCCAAAAAGGACAAAGGAACT
CAAATCAGTTGTCCATAGTGCTCCTGGCTGGAAGTTATTTGGTAAAGTCCCTCCCAGAGAAAATCTTCAG
AAAACCTCCAAAATTATTCAGCAGGAGTACGAAGCTCGCACAGGGAGGACCTGTAAAGCAGCCCCCCAGT
CTTCACGACGCAAGAGCTTTGCGCTGGAGCCACTTTCTACCACTGCCCTGATTCTGGAGGACCGACCACC
GAATCTTCCTGCGAAATCTGTGGAAGAAGCGCTGCGTCACCGGCAGGAGTATGATGAGATGGTGGCCGAA
GCTAAAAAACGAGAACTTTATGAAATCTTTCTTTCAAGAGCAAAAGAACGTTGGAAAAGCTTCAGTGAAT
CAAGTTCTGAGAACGACACGGAAGGTCTATCTGTTGCTGACCGAGAGGCTAGTCTGGAATTAATTAAGTT
GGACATATCCCGTACATTTCCATCTCTCTACATCTTTCAGAAGGGTGGCCCATATCACGATGTTTTGCAT
AGTATCTTAGGGGCATATACATGTTACAGACCTGATGTTGGTTATGTCCAGGGGATGTCCTTCATCGCAG
CCGTTCTCATCCTCAATCTGGAGGAAGCAGACGCCTTCATTGCGTTCGCGAATCTCCTAAACAAGCCGTG
CCAACTGGCCTTTTTCCGAGTGGATCACAGCATGATGTTGAAGTATTTTGCAACATTTGAAGTATTCTTT
GAGGAAAACCTATCCAAACTATTTCTTCATTTCAAGTCGTATAATCTGACACCAGATATATATTTGATAG
ATTGGATCTTCACATTGTACAGCAAATCACTGCCACTTGATCTGGCTTGTCGAGTCTGGGATGTGTTTTG
TAGAGATGGGGAGGAATTTTTATTTAGGACTGGATTAGGGATCCTCCGGCTATATGAAGATATACTCCTA
CAGATGGACTTTATTCATATAGCACAATTTCTTACCAAATTGCCAGAAGATATAACATCAGAAAAGCTTT
TCAGCTGCATCGCAGCCATTCAGATGCAGAATAGCACCAAGAAATGGACTCAGGTCTTTGCATCTGTAGC
AAAGGACATTAAAGAAGGGGACAAGAACACCAGCCCTGCTCTGAAGAGCTAA

Translation (623 aa):
MMGPEDAGACSGRNAELLPVPGPMGQDGKTVPATSGFSGGAVAAEPPEEAGEEEAPPPRQLLQRYLAAAA
GPLKPGLGGAEAEAEEAAAAAVPAARGSGMTNGDSGFLLRQDRRGPEEARRRRTCGRPCLLEPADEGVDG
AGGLDDWAAPLEDPLRSCCLAAGDTDDPDPAAATPAGRAVESAEPSLGLPDARFGSRNTFEVSRRQSAGD
LLPSAGPSAPLPAAEQGPGGTTARARRSGGFADFFARNLFPKRTKELKSVVHSAPGWKLFGKVPPRENLQ
KTSKIIQQEYEARTGRTCKAAPQSSRRKSFALEPLSTTALILEDRPPNLPAKSVEEALRHRQEYDEMVAE
AKKRELYEIFLSRAKERWKSFSESSSENDTEGLSVADREASLELIKLDISRTFPSLYIFQKGGPYHDVLH
SILGAYTCYRPDVGYVQGMSFIAAVLILNLEEADAFIAFANLLNKPCQLAFFRVDHSMMLKYFATFEVFF
EENLSKLFLHFKSYNLTPDIYLIDWIFTLYSKSLPLDLACRVWDVFCRDGEEFLFRTGLGILRLYEDILL
QMDFIHIAQFLTKLPEDITSEKLFSCIAAIQMQNSTKKWTQVFASVAKDIKEGDKNTSPALKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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