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Report for CCDS20290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20290.1 Under review, update Mus musculus 6 Emx1 23 108 98 CCDS HistoryNCBI Gene:13796Re-query CCDS DB by CCDS ID:20290.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20290.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045942.8 ENSMUSP00000046026.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045942.8Link to Ensembl Protein Viewer:ENSMUSP00000046026.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045942Re-query CCDS DB by Protein ID:ENSMUSP00000046026
Original member NCBI NM_010131.2 NP_034261.1 Updated not alive Link to Nucleotide Sequence:NM_010131.2Link to Protein Sequence:NP_034261.1Re-query CCDS DB by Nucleotide ID:NM_010131Re-query CCDS DB by Protein ID:NP_034261
Current member NCBI NM_010131.3 NP_034261.2 Pending alive Link to Nucleotide Sequence:NM_010131.3Link to Protein Sequence:NP_034261.2Re-query CCDS DB by Nucleotide ID:NM_010131Re-query CCDS DB by Protein ID:NP_034261Link to BLAST:NP_034261.2

Chromosomal Locations for CCDS 20290.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85187943 85188363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85194038 85194222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85203909 85204076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGTTCCAGCCCGCGGCTAAGCGGGGTTTCACCATAGAGTCCTTGGTGGCCAAGGATGGTGGCACCGGCG
GGAGTCCTGGCAGCGGGGGCGCGGGCTCCCATCCACTGGCTGTGGCCGCATCAGAGGAACCGCTCAGGCC
CACGGCGCTCAACTATCCTCACCCCAGTGCGGCCGAGACGGCCTTCGTGAGTGGCTTCCCTGCCGCTGCC
GCTGCGGGCGCCGGCCGCTCGCTCTATGGAGGGCCGGAGCTGGTGTTCCCAGAGGCCATGAACCACCCGG
CTCTGACGGTGCACCCGGCACACCAGCTGGGCTCCTCCTCGCTGCAACCCCCTCACTCTTTCTTCAGCGC
CCAGCATCGGGACCCTCTCCACTTCTACCCCTGGGTGCTTCGGAATCGCTTCTTTGGCCACCGCTTCCAG
GCAAGCGACGTTCCCCAGGACGGGCTGCTTTTGCACGGGCCCTTCGCACGCAAGCCCAAGCGGATTCGCA
CAGCCTTCTCGCCCTCGCAGCTGCTGCGGCTGGAGCGAGCCTTTGAGAAGAATCACTACGTGGTGGGAGC
CGAGCGGAAGCAGCTGGCAGGCAGCCTCAGCCTCTCCGAGACGCAGGTGAAGGTGTGGTTCCAGAATCGG
AGGACAAAATACAAACGGCAGAAGCTGGAAGAGGAAGGGCCGGAGTCTGAGCAGAAGAAGAAGGGTTCCC
ACCATATCAACCGGTGGCGCATCGCCACGAAGCAGGCCAACGGGGAGGACATTGATGTCACCTCCAATGA
CTAG

Translation (257 aa):
MFQPAAKRGFTIESLVAKDGGTGGSPGSGGAGSHPLAVAASEEPLRPTALNYPHPSAAETAFVSGFPAAA
AAGAGRSLYGGPELVFPEAMNHPALTVHPAHQLGSSSLQPPHSFFSAQHRDPLHFYPWVLRNRFFGHRFQ
ASDVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNR
RTKYKRQKLEEEGPESEQKKKGSHHINRWRIATKQANGEDIDVTSND


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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