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Report for CCDS17831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17831.1 Public Mus musculus 3 Enpep 23 108 98 CCDS HistoryNCBI Gene:13809Re-query CCDS DB by CCDS ID:17831.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029658.13 ENSMUSP00000029658.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029658.13Link to Ensembl Protein Viewer:ENSMUSP00000029658.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029658Re-query CCDS DB by Protein ID:ENSMUSP00000029658
Original member Current member NCBI NM_007934.3 NP_031960.1 Accepted alive Link to Nucleotide Sequence:NM_007934.3Link to Protein Sequence:NP_031960.1Re-query CCDS DB by Nucleotide ID:NM_007934Re-query CCDS DB by Protein ID:NP_031960Link to BLAST:NP_031960.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031960.1 945 P16406 945 100% 0 0

Chromosomal Locations for CCDS 17831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 129270279 129270422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129271345 129271423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129276642 129276782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129280423 129280593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129280685 129280789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129280902 129280975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129281544 129281694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129283868 129283923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129284050 129284183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129293206 129293285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129298830 129298981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129299098 129299163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129303715 129303780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129305407 129305541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129309022 129309135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129309769 129309923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129312561 129312681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129319380 129319511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129321360 129321501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 129331862 129332481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2838 nt):
ATGAACTTTGCAGAGGAAGAGCCCTCCAAGAAATACTGCATTAAAGGCAAACACGTGGCCATCATCTGTG
GAGTAGTGGTGGCAGTTGGATTAATAGTGGGACTTTCTGTGGGTTTGACCAGGTCGTGTGAGCAGGACAC
AACCCCAGCTCCTTCCCAACCTCCTCCGGAAGCCAGCACTGCCCTCCCTCCTCAGGACCAGAATGTCTGC
CCTGACAGTGAAGATGAAAGCGGAGAATGGAAAAACTTCAGGCTGCCTGACTTCATCAATCCAGTTCACT
ACGACCTGGAGGTGAAGGCCCTGATGGAGGAAGACAGGTACACGGGAATAGTGACCATCTCTGTCAACTT
GAGCAAACCCACTCGTGACCTATGGCTCCACATCAGGGAGACCAAGATCACCAAGCTGCCGGAGCTAAGG
AGGCCCTCTGGGGAGCAGGTACCAATTCGACGGTGCTTCGAGTATAAGAAGCAGGAGTACGTGGTGATCC
AGGCTGCAGAAGACCTTGCGGCCACCAGTGGGGACAGTGTCTATCGGCTGACCATGGAGTTTAAAGGCTG
GCTGAACGGTTCCCTTGTGGGTTTTTACAAAACCACCTACATGGAGGACGGGCAAATCAGGAGCATAGCT
GCCACTGACCATGAACCAACAGATGCCAGGAAGTCCTTCCCTTGTTTCGACGAACCCAACAAGAAGTCAA
CTTACAGTATATCCATCATCCACCCAAAAGAATACTCAGCACTTTCTAATATGCCAGAAGAGAAATCAGA
GATGGTGGATGACAACTGGAAGAAAACCACTTTTGTGAAGTCTGTCCCAATGAGCACTTACCTGGTGTGC
TTTGCTGTGCATCGGTTCACTGCTATAGAGAGAAAATCCAGGAGCGGCAAACCACTCAAGGTCTATGTCC
AGCCCAATCAGAAGGAGACAGCAGAGTATGCGGCAAACATAACCCAAGCTGTATTTGATTACTTCGAAGA
CTACTTCGCTATGGAGTATGCGCTTCCTAAACTGGATAAAATTGCTATTCCAGATTTTGGCACCGGCGCC
ATGGAAAATTGGGGACTTGTCACTTACCGAGAAACAAACCTGCTTTACGACCCCCTACTATCGGCCTCAT
CTAACCAGCAGAGAGTGGCCAGCGTGGTTGCCCACGAACTTGTACACCAGTGGTTTGGAAATACTGTGAC
CATGGACTGGTGGGACGACTTGTGGCTAAATGAAGGATTTGCTTCGTTCTTCGAGTTCTTGGGAGTAAAC
CACGCAGAAAAAGACTGGCAGATGCTCAGTCAGGTGCTGCTTGAAGATGTGTTCCCCGTGCAAGAGGACG
ACTCCCTGATGTCTTCACATCCAGTGGTCGTCACCGTGTCCACGCCAGCTGAAATAACATCTGTGTTTGA
TGGGATATCATACAGCAAGGGAGCTTCTATTCTGAGAATGCTCCAAGACTGGATAACACCAGAGAAATTC
CAAAAAGGCTGTCAGATTTACTTGAAAAAATTCCAGTTCGCGAATGCAAAAACTTCCGACTTTTGGGATT
CACTGCAAGAGGCAAGCAATCTGCCAGTGAAAGAAGTGATGGACACCTGGACTAGCCAGATGGGTTATCC
TGTGGTCACTGTGAGTGGAAGGCAGAACATCACCCAGAAACGCTTTCTGTTGGACTCCAAAGCTGATCCT
TCGCAGCCACCGTCAGAGCTCGGTTACACATGGAATATTCCAGTCAGATGGGCTGATAATGACAACTCAA
GGATCACCGTGTACAATAGGTTAGACAAAGGAGGAATCACTCTGAATGCTAATCTTAGCGGAGATGCTTT
TCTCAAAATCAACCCAGATCACATTGGGTTTTATCGTGTAAATTATGAAGGAGGAACGTGGGATTGGATA
GCCGAGGCTCTCTCCTCAAACCACACGAGATTCTCCGCTGCTGACCGGTCAAGTTTTATTGATGATGCTT
TTGCTTTGGCAAGAGCTCAACTTCTGAATTATAAAATAGCTCTGAACTTGACCATGTATCTCAAATCAGA
AGAGGATTTCCTACCATGGGAGAGAGTCATTTCATCTGTAAGCTACATCATTAGCATGTTTGAAGATGAC
AGAGAGCTGTACCCCATGATAGAGACGTACTTTCAAGGCCAAGTGAAGCCCGTTGCAGATTTGCTGGGAT
GGCAGGATACCGGAAGCCACATCACAAAGTTACTCCGGGCCTCTATCTTAGGATTCGCATGCAAGATGGG
GGACAGAGAAGCCTTGGGCAATGCTTCCCAGTTATTTGACTCCTGGCTGAAAGGGAGCGCAAGTATTCCG
GTAAACCTCAGGCTGCTTGTGTACCGCTATGGAATGCAGAACTCTGGCAATGAGGCAGCGTGGAACTATA
CCCTAGAGCAGTATCAGAAAACATCGCTTGCCCAAGAGAAAGAAAAACTGCTCTATGGGTTAGCTTCAGT
GAAGGATGTTAAACTCTTGGCAAGGTATCTGGAAATGCTCAAAGACCCCAATATTATTAAAACTCAGGAT
GTATTTACCGTCATCCGCTACATCTCCTACAACAGTTATGGGAAGACAATGGCCTGGAATTGGATACAAC
TCAACTGGGACTATCTGGTCAGCAGATTTACAATCAATGACAGATACCTTGGCCGGATCGTCACCATAGC
TGAGCCCTTCAACACTGAACTGCAGCTCTGGCAGATGCAGAGCTTTTTTGCAAAATATCCAAATGCTGGC
GCTGGAGCAAAACCTAGAGAGCAAGTGCTGGAGACGGTGAAGAACAACATCGAGTGGCTAAACGTGAACA
GACAGTCCATCAGAGAGTGGTTCGCTAGCCTGCCGTAG

Translation (945 aa):
MNFAEEEPSKKYCIKGKHVAIICGVVVAVGLIVGLSVGLTRSCEQDTTPAPSQPPPEASTALPPQDQNVC
PDSEDESGEWKNFRLPDFINPVHYDLEVKALMEEDRYTGIVTISVNLSKPTRDLWLHIRETKITKLPELR
RPSGEQVPIRRCFEYKKQEYVVIQAAEDLAATSGDSVYRLTMEFKGWLNGSLVGFYKTTYMEDGQIRSIA
ATDHEPTDARKSFPCFDEPNKKSTYSISIIHPKEYSALSNMPEEKSEMVDDNWKKTTFVKSVPMSTYLVC
FAVHRFTAIERKSRSGKPLKVYVQPNQKETAEYAANITQAVFDYFEDYFAMEYALPKLDKIAIPDFGTGA
MENWGLVTYRETNLLYDPLLSASSNQQRVASVVAHELVHQWFGNTVTMDWWDDLWLNEGFASFFEFLGVN
HAEKDWQMLSQVLLEDVFPVQEDDSLMSSHPVVVTVSTPAEITSVFDGISYSKGASILRMLQDWITPEKF
QKGCQIYLKKFQFANAKTSDFWDSLQEASNLPVKEVMDTWTSQMGYPVVTVSGRQNITQKRFLLDSKADP
SQPPSELGYTWNIPVRWADNDNSRITVYNRLDKGGITLNANLSGDAFLKINPDHIGFYRVNYEGGTWDWI
AEALSSNHTRFSAADRSSFIDDAFALARAQLLNYKIALNLTMYLKSEEDFLPWERVISSVSYIISMFEDD
RELYPMIETYFQGQVKPVADLLGWQDTGSHITKLLRASILGFACKMGDREALGNASQLFDSWLKGSASIP
VNLRLLVYRYGMQNSGNEAAWNYTLEQYQKTSLAQEKEKLLYGLASVKDVKLLARYLEMLKDPNIIKTQD
VFTVIRYISYNSYGKTMAWNWIQLNWDYLVSRFTINDRYLGRIVTIAEPFNTELQLWQMQSFFAKYPNAG
AGAKPREQVLETVKNNIEWLNVNRQSIREWFASLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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