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Report for CCDS6649.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6649.1 Public Homo sapiens 9 CARNMT1 24 110 108 CCDS HistoryNCBI Gene:138199Re-query CCDS DB by CCDS ID:6649.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6649.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376834.8 ENSP00000366030.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376834.8Link to Ensembl Protein Viewer:ENSP00000366030.3Re-query CCDS DB by Nucleotide ID:ENST00000376834Re-query CCDS DB by Protein ID:ENSP00000366030
Original member Current member NCBI NM_152420.3 NP_689633.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152420.3Link to Protein Sequence:NP_689633.1Re-query CCDS DB by Nucleotide ID:NM_152420Re-query CCDS DB by Protein ID:NP_689633Link to BLAST:NP_689633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689633.1 409 Q8N4J0 409 100% 0 0

Chromosomal Locations for CCDS 6649.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 74983767 74983868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74984907 74985010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74996447 74996560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74998598 74998776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 74999730 74999870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75016268 75016431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75017253 75017448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75028012 75028241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCAGCGACGGCGTCGCCCTCCGCCGCCCACCTCCCGGCTGCCCGAGGGCTGCGGGGGAGGAGGCGGTG
GCAGCGAGGAGGTGGAAGTGCAGTTTTCCGCCGGGCGTTGGGGCTCGGCCGCGGCGGTTTCGGCGGCAGC
GGCGGCGGCCACGCGCAGCACCGAGGAGGAGGAGGAGAGGCTTGAGCGTGAGCACTTCTGGAAGATCATT
AATGCCTTCCGCTACTACGGCACCAGTATGCATGAGCGGGTGAACCGAACAGAAAGACAGTTTCGATCAC
TTCCAGCTAACCAACAGAAACTACTTCCTCAGTTTCTTCTTCACTTGGACAAGATCCGGAAATGCATTGA
TCATAATCAAGAAATACTACTGACCATTGTGAATGATTGCATACATATGTTTGAAAATAAAGAATATGGA
GAAGATGGGAATGGAAAGATTATGCCAGCATCTACATTTGACATGGATAAGTTAAAATCCACGCTGAAAC
AGTTTGTGAGAGACTGGAGTGAAACTGGGAAAGCAGAAAGGGATGCCTGTTACCAGCCAATCATTAAAGA
AATTTTAAAAAATTTTCCAAAAGAGAGATGGGATCCTTCTAAAGTAAATATTCTGGTACCTGGTGCTGGA
CTAGGAAGACTGGCCTGGGAAATAGCTATGCTAGGTTATGCTTGTCAAGGAAATGAATGGAGTTTTTTTA
TGCTCTTTTCTTCCAACTTTGTACTCAACAGATGTTCTGAAATTAATAAATATAAACTTTATCCTTGGAT
CCATCAGTTTAGCAATAACCGGAGATCAGCTGATCAGATTCGACCCATCTTTTTCCCTGATGTTGACCCC
CACAGTCTTCCTCCTGGTTCTAACTTTTCTATGACAGCAGGAGATTTTCAAGAGATTTATTCAGAATGCA
ATACCTGGGACTGTATTGCTACCTGTTTCTTCATAGACACAGCTCACAATGTAATTGATTATATTGATAC
AATATGGAAAATACTCAAGCCAGGTGGAATTTGGATAAATCTAGGTCCTCTGCTGTACCACTTTGAAAAT
CTGGCAAATGAACTTTCCATAGAATTGAGCTATGAGGATATAAAAAACGTTGTTCTGCAGTATGGATTCA
AGGTAGAGGTGGAAAAAGAATCTGTATTGTCAACATATACTGTGAATGATCTCTCTATGATGAAATACTA
CTATGAATGTGTCTTGTTTGTGGTCCGTAAGCCACAATAA

Translation (409 aa):
MQRRRRPPPPTSRLPEGCGGGGGGSEEVEVQFSAGRWGSAAAVSAAAAAATRSTEEEEERLEREHFWKII
NAFRYYGTSMHERVNRTERQFRSLPANQQKLLPQFLLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYG
EDGNGKIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAG
LGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDP
HSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNVIDYIDTIWKILKPGGIWINLGPLLYHFEN
LANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYTVNDLSMMKYYYECVLFVVRKPQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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