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Report for CCDS37791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37791.1 Public Mus musculus 18 Nr3c1 23 108 98 CCDS HistoryNCBI Gene:14815Re-query CCDS DB by CCDS ID:37791.1Re-query CCDS DB by GeneID:14815See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37791.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025300.12 ENSMUSP00000025300.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025300.12Link to Ensembl Protein Viewer:ENSMUSP00000025300.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000025300Re-query CCDS DB by Protein ID:ENSMUSP00000025300
Original member Current member EBI ENSMUST00000115567.7 ENSMUSP00000111229.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115567.7Link to Ensembl Protein Viewer:ENSMUSP00000111229.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115567Re-query CCDS DB by Protein ID:ENSMUSP00000111229
Original member Current member EBI ENSMUST00000115571.7 ENSMUSP00000111233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115571.7Link to Ensembl Protein Viewer:ENSMUSP00000111233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115571Re-query CCDS DB by Protein ID:ENSMUSP00000111233
Original member Current member NCBI NM_001361209.1 NP_001348138.1 Accepted alive Link to Nucleotide Sequence:NM_001361209.1Link to Protein Sequence:NP_001348138.1Re-query CCDS DB by Nucleotide ID:NM_001361209Re-query CCDS DB by Protein ID:NP_001348138Link to BLAST:NP_001348138.1
Original member Current member NCBI NM_001361210.1 NP_001348139.1 Accepted alive Link to Nucleotide Sequence:NM_001361210.1Link to Protein Sequence:NP_001348139.1Re-query CCDS DB by Nucleotide ID:NM_001361210Re-query CCDS DB by Protein ID:NP_001348139Link to BLAST:NP_001348139.1
Original member Current member NCBI NM_001361211.1 NP_001348140.1 Accepted alive Link to Nucleotide Sequence:NM_001361211.1Link to Protein Sequence:NP_001348140.1Re-query CCDS DB by Nucleotide ID:NM_001361211Re-query CCDS DB by Protein ID:NP_001348140Link to BLAST:NP_001348140.1
Original member Current member NCBI NM_001361212.1 NP_001348141.1 Accepted alive Link to Nucleotide Sequence:NM_001361212.1Link to Protein Sequence:NP_001348141.1Re-query CCDS DB by Nucleotide ID:NM_001361212Re-query CCDS DB by Protein ID:NP_001348141Link to BLAST:NP_001348141.1
Original member Current member NCBI NM_008173.4 NP_032199.3 Accepted alive Link to Nucleotide Sequence:NM_008173.4Link to Protein Sequence:NP_032199.3Re-query CCDS DB by Nucleotide ID:NM_008173Re-query CCDS DB by Protein ID:NP_032199Link to BLAST:NP_032199.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001348138.1 792 P06537-1 792 100% 0 0
NP_001348139.1 792 P06537-1 792 100% 0 0
NP_001348140.1 792 P06537-1 792 100% 0 0
NP_001348141.1 792 P06537-1 792 100% 0 0
NP_032199.3 792 P06537-1 792 100% 0 0

Chromosomal Locations for CCDS 37791.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 39414482 39414634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39415696 39415853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39420576 39420706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39421407 39421551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39422488 39422763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39424383 39424499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39428617 39428780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 39485998 39487232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2379 nt):
ATGGACTCCAAAGAATCCTTAGCTCCCCCTGGTAGAGACGAAGTCCCCAGCAGTTTGCTTGGCCGGGGGA
GGGGAAGCGTGATGGACTTGTATAAAACCCTGAGGGGTGGAGCTACAGTCAAGGTTTCTGCGTCTTCACC
CTCAGTGGCTGCTGCTTCTCAGGCAGATTCCAAGCAGCAGAGGATTCTCCTTGATTTTTCAAAAGGCTCA
GCAAGCAATGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGC
CAGATTTATCCAAAGCCGTTTCACTGTCCATGGGACTGTATATGGGAGAGACCGAAACAAAAGTGATGGG
GAATGACTTGGGCTACCCACAGCAGGGCCAGCTTGGCCTCTCCTCTGGGGAAACAGACTTTCGGCTTCTG
GAAGAAAGCATTGCAAACCTCAATAGGTCGACCAGCCGTCCAGAGAACCCCAAGAGTTCAACACCTGCAG
CTGGGTGTGCTACCCCGACAGAGAAGGAGTTTCCCCAGACTCACTCTGATCCATCTTCAGAACAGCAAAA
TAGAAAAAGCCAGCCTGGCACCAACGGTGGCAGTGTGAAATTGTATACCACAGACCAAAGCACCTTTGAC
ATCTTGCAGGATTTGGAGTTTTCTGCCGGGTCCCCAGGTAAAGAGACAAACGAGAGTCCTTGGAGGTCAG
ACCTGTTGATAGATGAAAACTTGCTTTCTCCTTTGGCGGGAGAAGATGATCCATTCCTTCTGGAAGGGGA
CGTGAATGAGGATTGCAAGCCTCTTATTTTACCGGACACTAAACCTAAAATTCAGGATACTGGAGATACA
ATCTTATCAAGCCCCAGCAGTGTGGCACTGCCCCAAGTGAAAACAGAGAAAGATGATTTCATTGAGCTTT
GCACCCCTGGGGTAATTAAGCAAGAGAAACTGGGCCCGGTTTATTGCCAGGCAAGCTTTTCTGGGACAAA
TATAATTGGGAATAAAATGTCTGCCATTTCTGTTCATGGCGTGAGTACCTCTGGAGGACAGATGTACCAC
TATGACATGAATACAGCATCCCTTTCTCAGCAGCAGGATCAGAAGCCTGTTTTTAATGTCATTCCACCAA
TTCCTGTTGGTTCTGAAAACTGGAATAGGTGCCAAGGGTCTGGAGAGGACAACCTGACTTCCTTGGGGGC
TATGAACTTCGCAGGCCGCTCAGTGTTTTCTAATGGATATTCAAGCCCTGGAATGAGACCAGATGTGAGT
TCTCCTCCGTCCAGCTCCTCCACAGCAACGGGACCACCTCCCAAACTCTGCCTGGTGTGCTCCGATGAAG
CTTCGGGATGCCATTATGGGGTGCTGACGTGTGGAAGCTGTAAAGTCTTCTTTAAAAGAGCAGTGGAAGG
ACAGCACAATTACCTTTGTGCTGGAAGAAATGATTGCATCATTGATAAAATTCGAAGAAAAAACTGTCCA
GCATGCCGCTATCGAAAATGTCTTCAAGCTGGAATGAACCTGGAAGCTCGAAAAACGAAGAAAAAAATTA
AAGGAATTCAGCAAGCCACTGCAGGAGTCTCACAAGACACTTCTGAAAACGCTAACAAAACAATAGTTCC
TGCCGCGCTGCCACAGCTTACCCCTACCCTGGTGTCACTGCTGGAGGTGATCGAGCCTGAGGTGTTATAT
GCAGGATATGACAGCTCTGTTCCAGACTCAGCATGGAGAATTATGACCACGCTCAACATGTTAGGTGGGC
GCCAAGTGATTGCCGCAGTGAAATGGGCAAAGGCGATACCAGGATTCAGAAACTTACACCTGGATGACCA
AATGACCCTTCTACAGTACTCATGGATGTTTCTCATGGCATTTGCCCTGGGTTGGAGATCATACAGACAA
GCAAGTGGAAACCTGCTATGCTTTGCTCCTGATCTGATTATTAATGAGCAGAGAATGACTCTACCCTGCA
TGTATGACCAATGTAAACACATGCTGTTTATCTCCACTGAATTACAAAGATTGCAGGTATCCTATGAAGA
GTATCTCTGTATGAAAACCTTACTGCTTCTCTCCTCAGTTCCTAAGGAAGGTCTGAAGAGCCAAGAGTTA
TTTGATGAGATTCGAATGACTTATATCAAAGAGCTAGGAAAAGCCATTGTCAAAAGGGAAGGAAACTCCA
GTCAGAATTGGCAGCGGTTTTATCAACTGACAAAACTTTTGGACTCCATGCATGATGTGGTTGAAAATCT
CCTTAGCTACTGCTTCCAAACATTTTTGGATAAGTCCATGAGTATTGAATTCCCAGAGATGTTAGCTGAA
ATCATCACTAATCAGATACCAAAATACTCAAATGGAAATATCAAAAAGCTTCTGTTTCATCAGAAATGA

Translation (792 aa):
MDSKESLAPPGRDEVPSSLLGRGRGSVMDLYKTLRGGATVKVSASSPSVAAASQADSKQQRILLDFSKGS
ASNAQQQQQQQQQQQQQQQQQPQPDLSKAVSLSMGLYMGETETKVMGNDLGYPQQGQLGLSSGETDFRLL
EESIANLNRSTSRPENPKSSTPAAGCATPTEKEFPQTHSDPSSEQQNRKSQPGTNGGSVKLYTTDQSTFD
ILQDLEFSAGSPGKETNESPWRSDLLIDENLLSPLAGEDDPFLLEGDVNEDCKPLILPDTKPKIQDTGDT
ILSSPSSVALPQVKTEKDDFIELCTPGVIKQEKLGPVYCQASFSGTNIIGNKMSAISVHGVSTSGGQMYH
YDMNTASLSQQQDQKPVFNVIPPIPVGSENWNRCQGSGEDNLTSLGAMNFAGRSVFSNGYSSPGMRPDVS
SPPSSSSTATGPPPKLCLVCSDEASGCHYGVLTCGSCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCP
ACRYRKCLQAGMNLEARKTKKKIKGIQQATAGVSQDTSENANKTIVPAALPQLTPTLVSLLEVIEPEVLY
AGYDSSVPDSAWRIMTTLNMLGGRQVIAAVKWAKAIPGFRNLHLDDQMTLLQYSWMFLMAFALGWRSYRQ
ASGNLLCFAPDLIINEQRMTLPCMYDQCKHMLFISTELQRLQVSYEEYLCMKTLLLLSSVPKEGLKSQEL
FDEIRMTYIKELGKAIVKREGNSSQNWQRFYQLTKLLDSMHDVVENLLSYCFQTFLDKSMSIEFPEMLAE
IITNQIPKYSNGNIKKLLFHQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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