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Report for CCDS35123.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35123.2 Public Homo sapiens 9 OR1N2 24 110 108 CCDS HistoryNCBI Gene:138882Re-query CCDS DB by CCDS ID:35123.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35123.1
The coding region has been updated to start at an alternate in-frame start codon that is supported by conservation data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 35123.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373688.3 ENSP00000362792.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373688.3Link to Ensembl Protein Viewer:ENSP00000362792.3Re-query CCDS DB by Nucleotide ID:ENST00000373688Re-query CCDS DB by Protein ID:ENSP00000362792
Original member Current member NCBI NM_001004457.2 NP_001004457.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004457.2Link to Protein Sequence:NP_001004457.2Re-query CCDS DB by Nucleotide ID:NM_001004457Re-query CCDS DB by Protein ID:NP_001004457Link to BLAST:NP_001004457.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004457.2 316 Q8NGR9 316 100% 0 0

Chromosomal Locations for CCDS 35123.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 122553212 122554162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGGAAAACCAGGCAGAGTGAACCAAACCACTGTTTCAGACTTCCTCCTTCTAGGACTCTCTGAGTGGC
CAGAGGAGCAGCCTCTTCTGTTTGGCATCTTCCTTGGCATGTACCTGGTCACCATGGTGGGGAACCTGCT
CATTATCCTGGCCATCAGCTCTGACCCACACCTCCATACTCCCATGTACTTCTTTCTGGCCAACCTGTCA
TTAACTGATGCCTGTTTCACTTCTGCCTCCATCCCCAAAATGCTGGCCAACATTCATACCCAGAGTCAGA
TCATCTCGTATTCTGGGTGTCTTGCACAGCTATATTTCCTCCTTATGTTTGGTGGCCTTGACAACTGCCT
GCTGGCTGTGATGGCATATGACCGCTATGTGGCCATCTGCCAACCACTCCATTACAGCACATCTATGAGT
CCCCAGCTCTGTGCACTAATGCTGGGTGTGTGCTGGGTGCTAACCAACTGTCCTGCCCTGATGCACACAC
TGTTGCTGACCCGCGTGGCTTTCTGTGCCCAGAAAGCCATCCCTCATTTCTATTGTGATCCTAGTGCTCT
CCTGAAGCTTGCCTGCTCAGATACCCATGTAAACGAGCTGATGATCATCACCATGGGCTTGCTGTTCCTC
ACTGTTCCCCTCCTGCTGATCGTCTTCTCCTATGTCCGCATTTTCTGGGCTGTGTTTGTCATCTCATCTC
CTGGAGGGAGATGGAAGGCCTTCTCTACCTGTGGTTCTCATCTCACGGTGGTTCTGCTCTTCTATGGGTC
TCTTATGGGTGTGTATTTACTTCCTCCATCAACTTACTCTACAGAGAGGGAAAGTAGGGCTGCTGTTCTC
TATATGGTGATTATTCCCACGCTAAACCCATTCATTTATAGCTTGAGGAACAGAGACATGAAGGAGGCTT
TGGGTAAACTTTTTGTCAGTGGAAAAACATTCTTTTTATGA

Translation (316 aa):
MGKPGRVNQTTVSDFLLLGLSEWPEEQPLLFGIFLGMYLVTMVGNLLIILAISSDPHLHTPMYFFLANLS
LTDACFTSASIPKMLANIHTQSQIISYSGCLAQLYFLLMFGGLDNCLLAVMAYDRYVAICQPLHYSTSMS
PQLCALMLGVCWVLTNCPALMHTLLLTRVAFCAQKAIPHFYCDPSALLKLACSDTHVNELMIITMGLLFL
TVPLLLIVFSYVRIFWAVFVISSPGGRWKAFSTCGSHLTVVLLFYGSLMGVYLLPPSTYSTERESRAAVL
YMVIIPTLNPFIYSLRNRDMKEALGKLFVSGKTFFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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