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Report for CCDS36291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36291.1 Public Mus musculus 11 Sp2 23 108 98 CCDS HistoryNCBI Gene:78912Re-query CCDS DB by CCDS ID:36291.1Re-query CCDS DB by GeneID:78912See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107624.7 ENSMUSP00000103250.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107624.7Link to Ensembl Protein Viewer:ENSMUSP00000103250.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107624Re-query CCDS DB by Protein ID:ENSMUSP00000103250
Original member Current member NCBI NM_030220.4 NP_084496.2 Accepted alive Link to Nucleotide Sequence:NM_030220.4Link to Protein Sequence:NP_084496.2Re-query CCDS DB by Nucleotide ID:NM_030220Re-query CCDS DB by Protein ID:NP_084496Link to BLAST:NP_084496.2

Chromosomal Locations for CCDS 36291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96954470 96954570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96955775 96955968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96956105 96956279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96957424 96957736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96961038 96962009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96963365 96963444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96977621 96977627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGAGCGCAGATCCACAGATGAGCATGGCCGCCACTGCTGCTGTCAGTCCCAGTGACTACCTGCAGCCTG
CTGCTGCTACTACCCAGGACTCCCAGCCATCTCCCTTGGCCCTGCTTGCTGCGACATGTAGCAAAATTGG
CCCCCCAGCTGTTGAAGCTGCAGTGACACCTCCTGCTCCCCCCCAGCCTACCCCAAGGAAACTGGTCCCT
ATCAAACCCGCTCCTCTCCCTCTCAGTCCCTGCAAGAATAGCTTTAGCATCTTATCATCTAAAGGAAATA
TACTTCAGATTCAGGGCTCCCAGCTGAGTACCTCCTACCCTGGAGGGCAGTTTGTGTTTGCAATCCAGAA
CCCCACCCTGATCAACAAAGGGAGCCGATCAAATGCAAGTATCCAGTACCAAGTCCCTCAGATCCAAGGG
AACAGTTCCCAGACCATCCAGGTGCAGCCCAGTCTCACCAACCAGATCCAGGTCATCCCAGGCACCAACC
AAGCCATCACCACCCCGTCAACATCTGGTCATAAGCCTGTCCCCATCAAGCCAGCTCCTGTCCAGAAGTC
AAGTACGACTACCACCCCTGTGCAGAGCGGGGCCAACGTGGTGAAGCTGACAGGCGGGGGTAGCAACATG
ACGCTCACCCTGCCGCTCAACAACCTGGTGAACACCAGCGATATTGGGGGCCCTGCTCAGCTCCTCACTG
AGAGCCCCCCCACCCCACTGTCTAAGACTAACAAGAAAGCTAGGAAGAAGAGCCTCCCTGTGTCACAGCC
ATCCGTAGCTGTGGCTGAGCAGGTGGAGACGGTGCTGATAGAGACCACGGCAGACAACATCATCCAGGCA
GGAAACAACCTGCTGATCGTCCAGAGCCCTGGCGGGGGCCAGCCAGCTGTGGTCCAGCAAGTCCAGGTGG
TGCCACCCAAGGCTGAGCAGCAGCAGGTGGTCCAGATCCCCCAGCAGGCACTGCGGGTGGTGCAAGCTGC
CTCTGCCACCCTCCCCACCGTCCCCCAGAAGCCCTCTCAGAACTTTCAGATCCAGACAACTGAACCAACA
CCAACCCAGGTTTATATCCGTACACCTTCTGGTGAGGTACAGACAGTCCTTGTCCAGGACAGCCCCCCAG
CAACAGCTGCAACCACATCAACCGTCACCTGTAACAGCCCTGCACTCCGAGCTCCCCATCTGAGTGGCAC
CAGCAAAAAACATTCAGCTGCCATTCTCCGAAAAGAGCGGCCCCTGCCAAAGATTGCACCTGCTGGGAGC
ATCATCAGCCTGAACGCCGCACAGCTGGCAGCAGCTGCTCAGGCCATGCAGACCATCAACATCAATGGTG
TCCAAGTCCAGGGTGTGCCTGTCACCATCACCAACACTGGCGGGCAGCAGCAGCTGACCGTGCAGAACGT
TTCTGGAAACAACCTGACTATCAGTGGGCTGAGCCCCACCCAGATCCAGCTGCAGATGGAGCAGGCTCTA
GCCGGAGAGGCCCAGCCTGGGGAGAAACGGCGGCGCATGGCCTGCACGTGTCCCAACTGCAAGGATGGGG
AGAAGAGGTCTGGGGAGCAGGGCAAGAAGAAGCACGTGTGCCACATCCCGGACTGCGGGAAGACTTTCCG
GAAGACATCCTTGCTCCGGGCCCACGTCCGCCTGCACACTGGCGAGCGGCCCTTTGTCTGCAACTGGTTC
TTCTGTGGAAAGAGATTCACTCGGAGCGATGAACTCCAGCGACATGCTCGAACCCACACAGGGGACAAGC
GCTTTGAGTGTGCCCAATGTCAGAAGCGCTTCATGAGGAGTGACCACCTCACCAAGCATTACAAGACCCA
CCTAGGCACGAAGGGCTTGTAA

Translation (613 aa):
MSADPQMSMAATAAVSPSDYLQPAAATTQDSQPSPLALLAATCSKIGPPAVEAAVTPPAPPQPTPRKLVP
IKPAPLPLSPCKNSFSILSSKGNILQIQGSQLSTSYPGGQFVFAIQNPTLINKGSRSNASIQYQVPQIQG
NSSQTIQVQPSLTNQIQVIPGTNQAITTPSTSGHKPVPIKPAPVQKSSTTTTPVQSGANVVKLTGGGSNM
TLTLPLNNLVNTSDIGGPAQLLTESPPTPLSKTNKKARKKSLPVSQPSVAVAEQVETVLIETTADNIIQA
GNNLLIVQSPGGGQPAVVQQVQVVPPKAEQQQVVQIPQQALRVVQAASATLPTVPQKPSQNFQIQTTEPT
PTQVYIRTPSGEVQTVLVQDSPPATAATTSTVTCNSPALRAPHLSGTSKKHSAAILRKERPLPKIAPAGS
IISLNAAQLAAAAQAMQTININGVQVQGVPVTITNTGGQQQLTVQNVSGNNLTISGLSPTQIQLQMEQAL
AGEAQPGEKRRRMACTCPNCKDGEKRSGEQGKKKHVCHIPDCGKTFRKTSLLRAHVRLHTGERPFVCNWF
FCGKRFTRSDELQRHARTHTGDKRFECAQCQKRFMRSDHLTKHYKTHLGTKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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