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Report for CCDS87559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87559.1 Public Homo sapiens 7 TCAF2 24 110 108 CCDS HistoryNCBI Gene:285966Re-query CCDS DB by CCDS ID:87559.1Re-query CCDS DB by GeneID:285966See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000441159.7 ENSP00000404265.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441159.7Link to Ensembl Protein Viewer:ENSP00000404265.2Re-query CCDS DB by Nucleotide ID:ENST00000441159Re-query CCDS DB by Protein ID:ENSP00000404265
Original member Current member EBI ENST00000684770.1 ENSP00000506869.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684770.1Link to Ensembl Protein Viewer:ENSP00000506869.1Re-query CCDS DB by Nucleotide ID:ENST00000684770Re-query CCDS DB by Protein ID:ENSP00000506869
Original member Current member NCBI NM_001363538.2 NP_001350467.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001363538.2Link to Protein Sequence:NP_001350467.1Re-query CCDS DB by Nucleotide ID:NM_001363538Re-query CCDS DB by Protein ID:NP_001350467Link to BLAST:NP_001350467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350467.1 919 A6NFQ2-1 919 100% 0 0

Chromosomal Locations for CCDS 87559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 143702995 143703617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143719683 143720674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143721281 143721378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143722658 143722871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143723211 143723450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143724360 143724697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 143727413 143727667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2760 nt):
ATGGCGACCATTGCTGCTGCTGCGTTTGAGGCCCTCATGGATGGAGTGACATGCTGGGATGTCCCCAGAG
GCCCCATCCCCAGTGAACTCCTTCTTATTGGAGAAGCCGCCTTCCCCGTGATGGTGAATGACAAGGGCCA
GGTGCTCATTGCTGCCTCCTCCTACGGCCGAGGCCGCCTCGTGGTTGTGTCCCATGAGGGCTACCTGTCG
CATACTGGCTTGGCTCCATTTCTCCTCAATGCAGTGAGCTGGCTCTGTCCCTGTCCTGGGGCTCCCGTGG
GAGTGCATCCATCCCTGGCACCTCTAGTAAACATCCTACAGGATGCTGGGCTTGAGGCACAGGTCAAGCC
AGAACCAGGAGAGCCCCTAGGGGTTTACTGTATCAATGCCTACAATGACACCTTGACTGCAACGCTGATC
CAGTTTGTGAAACATGGAGGGGGCTTGTTAATCGGGGGCCAGGCCTGGTACTGGGCCAGCCAGCACGGCC
CTGACAAGGTGCTCTCCAGGTTCCCTGGGAACAAGGTGACAAGTGTAGCTGGAGTGTACTTCACTGACAC
CTATGGGGACAGAGACCGGTTCAAGGTCTCTAAGAAGGTGCCCAAGATCCCACTCCATGTCAGGTATGGG
GAGGATGTCAGGCAGGACCAGCAGCAGCTCCTGGAGGGGATCTCAGAGCTGGACATCAGGACAGGGGGAG
TCCCCTCACAGCTGCTTGTACATGGAGCCCTGGCCTTCCCTCTGGGGCTGGATGCCTCACTCAACTGCTT
CCTGGCGGCTGCTCACTATGGCCGGGGCCGGGTGGTCCTGGCTGCCCACGAGTGCCTGCTCTGTGCTCCC
AAGATGGGGCCCTTCTTGCTCAATGCGGTGCGCTGGCTGGCCAGAGGCCAGACAGGCAAAGTTGGGGTGA
ACACAAATCTAAAAGATCTGTGTCCTCTCCTATCGGAGCATGGCCTGCAATGCAGCCTGGAGCCCCATCT
GAACAGCGACTTGTGTGTCTACTGCTGCAAGGCGTACAGTGACAAGGAGGCTAAGCAGCTGCAGGAGTTT
GTGGCTGAGGGTGGGGGGCTGCTGATTGGGGGCCAGGCCTGGTGGTGGGCCTCCCAGAACCCTGGCCACT
GCCCCTTGGCTGGCTTCCCTGGTAACATCATCCTCAACTGCTTTGGCCTCAGCATCCTGCCTCAGACTCT
CAAAGCAGGCTGCTTCCCCGTTCCCACCCCTGAGATGAGAAGCTACCACTTCCGCAAGGCGCTCTCTCAA
TTCCAGGCTATACTGAACCACGAGAATGGGAACTTGGAAAAGAGCTGTCTGGCAAAGTTGAGAGTTGATG
GTGCAGCCTTCCTACAGATTCCTGCGGAGGGGGTCCCTGCTTACATATCCCTGCACAGGCTCCTGAGGAA
GATGCTACGAGGGTCTGGCCTCCCAGCTGTGAGCCGGGAAAATCCAGTTGCCAGTGACTCCTATGAGGCT
GCGGTGCTCTCCCTGGCCACTGGGCTGGCTCACTCTGGAACTGACTGCTCCCAGCTGGCCCAGGGGCTTG
GCACCTGGACCTGCTCCTCCAGTTTGTACCCCTCAAAACACCCCATCACCGTGGAGATCAATGGAATCAA
CCCAGGCAACAATGATTGCTGGGTGAGTACCGGGCTCTACCTCCTGGAAGGACAAAATGCAGAAGTCTCA
CTGTCTGAAGCTGCTGCCTCTGCTGGCCTGAGGGTACAGATAGGCTGCCACACCGATGACCTTACCAAGG
CCAGGAAGCTATCTCGAGCCCCCGTGGTGACTCACCAATGCTGGATGGACAGGACTGAGCGGTCAGTCTC
CTGCCTCTGGGGCGGCCTCCTCTACGTCATCGTGCCCAAGGGCAGCCAACTAGGCCCTGTGCCTGTCACT
ATCAGGGGAGCTGTGCCTGCCCCATACTACAAGCTGGGTAAGACATCGCTGGAGGAGTGGAAGAGGCAGA
TGCAGGAGAACCTGGCTCCCTGGGGAGAGCTGGCCACGGACAACATCATCCTGACAGTGCCAACCACAAA
CCTTCAGGCCCTGAAGGACCCCGAGCCTGTGCTCCGCCTCTGGGATGAGATGATGCAGGCTGTGGCCAGG
CTGGCGGCTGAGCCCTTCCCTTTCCGCCGTCCTGAGAGGATTGTGGCTGATGTGCAGATCTCAGCTGGCT
GGATGCATTCAGGATACCCCATCATGTGCCACCTGGAGTCTGTGAAGGAGATCATCAATGAGATGGACAT
GAGGAGCAGGGGTGTGTGGGGCCCCATCCATGAGCTGGGCCACAACCAACAGCGGCATGGATGGGAGTTC
CCCCCACACACTACTGAGGCCACCTGTAACCTTTGGTCAGTCTACGTGCATGAAACAGTCCTGGGGATCC
CCAGGGCTCAGGCCCACGAGGCTCTGAGCCCTCCAGAGCGAGAGAGGAGAATCAAGGCCCACCTGGGAAA
GGGAGCCCCCCTGTGTGACTGGAATGTATGGACAGCCCTGGAAACATATCTACAGCTCCAAGAGGCCTTC
GGGTGGGAGCCATTCACCCAGCTCTTTGCTGAGTACCAGACCCTCTCTCACCTCCCCAAAGACAACACTG
GCAGGATGAATCTATGGGTGAAGAAGTTCTCTGAAAAAGTGAAGAAGAATCTGGTTCCCTTCTTTGAGGC
CTGGGGCTGGCCTATCCAGAAGGAGGTGGCTGACAGCCTGGCCTCCCTACCAGAGTGGCAGGAAAACCCC
ATGCAAGTGTACCTCCGTGCCAGGAAGTAA

Translation (919 aa):
MATIAAAAFEALMDGVTCWDVPRGPIPSELLLIGEAAFPVMVNDKGQVLIAASSYGRGRLVVVSHEGYLS
HTGLAPFLLNAVSWLCPCPGAPVGVHPSLAPLVNILQDAGLEAQVKPEPGEPLGVYCINAYNDTLTATLI
QFVKHGGGLLIGGQAWYWASQHGPDKVLSRFPGNKVTSVAGVYFTDTYGDRDRFKVSKKVPKIPLHVRYG
EDVRQDQQQLLEGISELDIRTGGVPSQLLVHGALAFPLGLDASLNCFLAAAHYGRGRVVLAAHECLLCAP
KMGPFLLNAVRWLARGQTGKVGVNTNLKDLCPLLSEHGLQCSLEPHLNSDLCVYCCKAYSDKEAKQLQEF
VAEGGGLLIGGQAWWWASQNPGHCPLAGFPGNIILNCFGLSILPQTLKAGCFPVPTPEMRSYHFRKALSQ
FQAILNHENGNLEKSCLAKLRVDGAAFLQIPAEGVPAYISLHRLLRKMLRGSGLPAVSRENPVASDSYEA
AVLSLATGLAHSGTDCSQLAQGLGTWTCSSSLYPSKHPITVEINGINPGNNDCWVSTGLYLLEGQNAEVS
LSEAAASAGLRVQIGCHTDDLTKARKLSRAPVVTHQCWMDRTERSVSCLWGGLLYVIVPKGSQLGPVPVT
IRGAVPAPYYKLGKTSLEEWKRQMQENLAPWGELATDNIILTVPTTNLQALKDPEPVLRLWDEMMQAVAR
LAAEPFPFRRPERIVADVQISAGWMHSGYPIMCHLESVKEIINEMDMRSRGVWGPIHELGHNQQRHGWEF
PPHTTEATCNLWSVYVHETVLGIPRAQAHEALSPPERERRIKAHLGKGAPLCDWNVWTALETYLQLQEAF
GWEPFTQLFAEYQTLSHLPKDNTGRMNLWVKKFSEKVKKNLVPFFEAWGWPIQKEVADSLASLPEWQENP
MQVYLRARK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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