NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25659.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25659.1 Public Mus musculus 11 Fbf1 23 108 98 CCDS HistoryNCBI Gene:217335Re-query CCDS DB by CCDS ID:25659.1Re-query CCDS DB by GeneID:217335See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25659.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103031.7 ENSMUSP00000099320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103031.7Link to Ensembl Protein Viewer:ENSMUSP00000099320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000103031Re-query CCDS DB by Protein ID:ENSMUSP00000099320
Original member Current member EBI ENSMUST00000106435.8 ENSMUSP00000102043.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106435.8Link to Ensembl Protein Viewer:ENSMUSP00000102043.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106435Re-query CCDS DB by Protein ID:ENSMUSP00000102043
Original member Current member NCBI NM_001364077.1 NP_001351006.1 Accepted alive Link to Nucleotide Sequence:NM_001364077.1Link to Protein Sequence:NP_001351006.1Re-query CCDS DB by Nucleotide ID:NM_001364077Re-query CCDS DB by Protein ID:NP_001351006Link to BLAST:NP_001351006.1
Original member Current member NCBI NM_172571.3 NP_766159.3 Accepted alive Link to Nucleotide Sequence:NM_172571.3Link to Protein Sequence:NP_766159.3Re-query CCDS DB by Nucleotide ID:NM_172571Re-query CCDS DB by Protein ID:NP_766159Link to BLAST:NP_766159.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351006.1 1173 A2A870-1 1173 100% 0 0
NP_766159.3 1173 A2A870-1 1173 100% 0 0

Chromosomal Locations for CCDS 25659.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116143383 116143466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116144433 116144542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116145425 116145542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116145623 116145760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116145835 116146011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116146436 116146621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116146704 116146826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116147708 116147826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116147904 116148043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116148121 116148228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116148813 116149019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116149119 116149219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116149367 116149522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116150789 116150847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116151019 116151113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116151422 116151517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116152477 116152947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116153953 116154052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116154707 116154864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116154991 116155126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116155384 116155500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116155958 116156035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116157689 116157827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116158889 116158939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116160062 116160110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116161425 116161509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116163318 116163359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116164663 116164690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116165832 116165882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3522 nt):
ATGACTGGACAGTGCTGTGAGGAGCTGCAGAGAGCCCCGAAGCCCAGGATGGCACTGAGAACCAAGAAAG
GATTGAAAGGGTCCATTGAGGATGTCCTTGGAGACCTCCTGGGAGATGACACAACACCACCTGAGAAGCC
TGCTGAGCCAGCTTCCCATGCCAAAGACACAGCGAGCTCACCTCAGTGGCAGGCTTCAAAGGCAAAGTTC
CTCCCAAAAGACAGCGTTGAAGGACTGGCAGGAGCTGATGCTGAGGCCTCCAGCGTCTCGGATGCAGACC
CACAGGTCTTCCTGCAGAACATGAAGGACTTGGACAGCATGGACGATGATCTCTTTGGTCGGATGAAGTC
TCACCAGCCCTCCGGCAAAGGAGCTGCAAAGGGTCCTGGGAAAGAAGGACCTAGCAATCACAAGCCTGCT
GGCACATTAACAGCTAATGAGAAAGGGTACACCATGCCCACTAAGAAGCCACCACCATCTTCCAGCAAGA
CTGGGCTTCAGTATAAGAAGTTCTCCTTTGAAGACTTTGAAGACCCACTGGCAGGACTTCTCTCTGATGA
GGAAGAAGAAACCGCCACGAAGCTGCCTGCAGTGGAGAGGAAACCTGCTCCCAAGAGCCCGGGCGCAGCA
GCAGGCCAAGGTCCTTCTGTTCCTCTGACCCCTGGGGATACGCCCATCAGGAAGAAAGAACTGCTCTTTG
ATGAAGGGGATGACATCATGACTACTCTGGGCTTTGAAGACAGCCCCAAGGCAGAGAGGAAGAAGACAGG
AGACCAGGAAGGGCCACTCCCTGCTCGCTCCAAGCTGGATGAACTGCTGGGTCGGGGTACAGCAGCCAAG
CTCCTCACTCGCCCAGGCACTGGGGAACGCAGAGAGTTCCAGTTAGACAAGAAGTATCAGAAGATGGGAG
GGGAGGAGTCTGTACCAGCTAGAGACAAGGAAGACAGCTGGGATGACGAGACCCTCACCTTTGGGGCTTA
CAAGCCTACCGTGGCCTCCTCTGAGGGCCGCCAGTCCCGCAGGCAGTCAGTCAGCAGGTTCTTGGGAGAA
GGAGGCCCAGACCCTAAGGGAGAAAGCCTAGGCTTCAAACAGAGCTCTCCACCAGCCTCCAGTCCTATCC
ACCCCAGGAAAGGAGGAGCTGACTGGTTAGGCCTTAAGGACAATGACCTGGACCTGCTGTCTCCCTCTCC
TGTTCAAAAGGCCCAACAGGAAGACTCACCCATGACACCCTCTCTCCTGCCTCCTACAAACCAGCCCTCA
GCCCCAGAGCCACAGTCTGCCCCAACTGGACTTCCCTCAGCAGCAAAGCCACCAGCCAAGGGTGCAAGAC
CCTCTCTCAAAGCCAGCCAGGCCTCCTCACCAAAAGCATCTGAGGAGAAAGAAGATGACTGGTTAAGCCA
TGTCATATCTCAGAAGAAATCCCAAAATCTAGCCAGAGAAGAGCGTGCGGGGCCCCCTAAGGACCTGGCC
TCGCTGGGGTCACTGGGTCAGACCCCTTCTGGCAGCCTGCCTGTTGCTCAGGTCCTTGAGCAGGCCCCTG
CTGGAGAAGCCTCGAAACCAACTACACAAGGAATGGCGGCTGTCAGGCCTGGTGTCACAGGGTCCTCCAT
GAGTTGGAGCCAAGCCACTACTGTTCTCCCTGTAGATGACCCCAAGAAAGGAGCAGCCTCTGCCTCTGGG
GACTTCTCTAGCAGAGAGCCTGCGGTTTACATTCCACACTCCCAGGAACCTACGGGGCTCTCTGTGCCTA
TCCAGACCCTCCTCCCAGAGTCCATGATGCAGAGTCTGCTGCCAGGCTCAGGATACCAGAAGCAGCTCCT
GGCCGCCCAGGGGCAGCTGCAGAGTAGCACTGCCCAGCTTCAGGTTGAGCTGCTGCAGAGCCAGACCAAG
CTGTCAGAGCTGGAGGCCCAGGTGCGCAAGTTGGAGCTGGAGCGGGCCCAGCACAGGATGCTGCTGGAGA
GTTTGCAGCAGCGACACCAGGCAGACCTGGAGCTCATCGAGGATGCACATAGAAGCCGTATCAAGGTGCT
AGAAACATCCTACCAGCAGCGGGAGGAGCAGCTGCGCAGAGAGAAGGAGGTGCTATCAGCTCAGCATGCG
TCATATTGCCGAGAAGCTGAGCAGGCCAGGGCTGAGCTCGTAGCCCAGCACCAGCGGCAGATGGCCATGG
CTGAACAGGAGAGGGACCAGGAGGTTGCCCGGCTCCGGGAGCTTCAGCAGGCATCCATCCTGGAGATGCG
CAAGGATCATGAGCACCAGCTGCAGCGGCTGAAGATGCTGAAGGACCAGGAGATTGATGCTGTCACCAGC
GCTACCTCCCATACTCGGTCCCTGAATGGCATCATCGAGCAGATGGAGAAGTTTTCCAGCAGCTTGAACA
CGCTGTCCTCCCGCGTGGAGGCCTCGCACCTTACCACCTCACAGCAACGAGAGCTGGGGATTCGGCAGCA
AGATGAGCAATTGCGAGCTCTGCAGGAGCGGCTGGGCCGACAGCAGCGAGACATGGAGGAAGAGCGGAAC
AGGCTACAGGAGGTCATCGGGAAGATGGAAGTACGCCTGAGTGAGCAGAGCCGGCTCCTGGAACAGGAAC
GTTGGCGGGTGGCCGCCGAGAAGACTAAGGCAGAGTCAGCCCAGCGCACTCTGGAGGAGCAAAGGAAGAT
CATGGTCCAGCAGATTGCCATGGAGAGGGAGGAGCTGGAGAGAGCCAAGAGCGCCTTGCTGGAGGAGCAG
AAGTCAGTCATGAATAAGTGTGGGGAGGAGCGGCGGCGCCTGGCAGCAGAGTGGGCTGAGTATTTCACAC
AGCAGAAGCTGAGTAAGGAACGGGCGGAGCGTGAGGCTGAGAGGGCGATGCATGCAGACTCCCAGCGGGA
GGGCACCATCATCAGCCTGACCAAGGAGCAGGCGGAGCTGACAGTTAGGGCCTGTGAGCTCCGGGCCAAG
GAGGAGAAGCTGCTTGCTGAGAGGGAGGCTTTGGAGAGAGAGCGCCAAGAGCTCCGGCTGGAGAAGGACA
GGTTACACAAAGCCAGCCTGCGCCTGCAGGCCCGTGCACAGGAGGTGGAACACATGAGTAAGGTAGCCTC
CAAGAAATACGAGGAGGGGGAGCAGGCCTTGCAGGAGGCGCAGCAGATGCAGAATGAGCAGCAGGGCCGG
CTGCAGGTGGTCCAGCGGCAGCAGGAGTGGCTGCGGCAGCAGGAGCAACGTGTGCACCAGGAGCACCTGA
GCCTGGCACAGCAGAGGCTGCAGCTGGACCGCGTGCGGCAGGAAGTGCCTGCTAGCCTTCCGGGGCTGCC
CCCCAGGGTTCAGGGCCCGGCAGCCTCCAGCCGGGATGCTGTCCAGGCCCCCGCTTCCAGCAGTCCTCAG
TGTAGCCAGCCAGCTGCTGCCCAGGTGCCCACACACCTTCTTGCCAAGCTGCTGCTGCTAAAGCATACAG
CAGAAGAGGACCACGACTTCTTGGAGAATGAACAGTTCTTCCTGGAGACTCTGAAGAAAGCACCCTATAA
TATGGCGTACCATTCTGCCTGA

Translation (1173 aa):
MTGQCCEELQRAPKPRMALRTKKGLKGSIEDVLGDLLGDDTTPPEKPAEPASHAKDTASSPQWQASKAKF
LPKDSVEGLAGADAEASSVSDADPQVFLQNMKDLDSMDDDLFGRMKSHQPSGKGAAKGPGKEGPSNHKPA
GTLTANEKGYTMPTKKPPPSSSKTGLQYKKFSFEDFEDPLAGLLSDEEEETATKLPAVERKPAPKSPGAA
AGQGPSVPLTPGDTPIRKKELLFDEGDDIMTTLGFEDSPKAERKKTGDQEGPLPARSKLDELLGRGTAAK
LLTRPGTGERREFQLDKKYQKMGGEESVPARDKEDSWDDETLTFGAYKPTVASSEGRQSRRQSVSRFLGE
GGPDPKGESLGFKQSSPPASSPIHPRKGGADWLGLKDNDLDLLSPSPVQKAQQEDSPMTPSLLPPTNQPS
APEPQSAPTGLPSAAKPPAKGARPSLKASQASSPKASEEKEDDWLSHVISQKKSQNLAREERAGPPKDLA
SLGSLGQTPSGSLPVAQVLEQAPAGEASKPTTQGMAAVRPGVTGSSMSWSQATTVLPVDDPKKGAASASG
DFSSREPAVYIPHSQEPTGLSVPIQTLLPESMMQSLLPGSGYQKQLLAAQGQLQSSTAQLQVELLQSQTK
LSELEAQVRKLELERAQHRMLLESLQQRHQADLELIEDAHRSRIKVLETSYQQREEQLRREKEVLSAQHA
SYCREAEQARAELVAQHQRQMAMAEQERDQEVARLRELQQASILEMRKDHEHQLQRLKMLKDQEIDAVTS
ATSHTRSLNGIIEQMEKFSSSLNTLSSRVEASHLTTSQQRELGIRQQDEQLRALQERLGRQQRDMEEERN
RLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTKAESAQRTLEEQRKIMVQQIAMEREELERAKSALLEEQ
KSVMNKCGEERRRLAAEWAEYFTQQKLSKERAEREAERAMHADSQREGTIISLTKEQAELTVRACELRAK
EEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGEQALQEAQQMQNEQQGR
LQVVQRQQEWLRQQEQRVHQEHLSLAQQRLQLDRVRQEVPASLPGLPPRVQGPAASSRDAVQAPASSSPQ
CSQPAAAQVPTHLLAKLLLLKHTAEEDHDFLENEQFFLETLKKAPYNMAYHSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH