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Report for CCDS28974.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28974.2 Public Mus musculus 17 Fam98a 23 108 98 CCDS HistoryNCBI Gene:72722Re-query CCDS DB by CCDS ID:28974.2Re-query CCDS DB by GeneID:72722See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28974.2
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28974.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112507.3 ENSMUSP00000108126.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112507.3Link to Ensembl Protein Viewer:ENSMUSP00000108126.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112507Re-query CCDS DB by Protein ID:ENSMUSP00000108126
Original member Current member NCBI NM_133747.2 NP_598508.2 Accepted alive Link to Nucleotide Sequence:NM_133747.2Link to Protein Sequence:NP_598508.2Re-query CCDS DB by Nucleotide ID:NM_133747Re-query CCDS DB by Protein ID:NP_598508Link to BLAST:NP_598508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598508.2 515 Q3TJZ6 515 100% 0 0

Chromosomal Locations for CCDS 28974.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75538202 75538861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75538947 75539114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75539401 75539517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75540111 75540191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75541196 75541380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75544748 75544882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75547611 75547759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75551741 75551793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGAGTGTGACCTCATGGAGACTGACATCTTGGAGTCGTTGGAAGATCTAGGTTACAAGGGCCCATTGT
TGGACGATGGTGCACTGTTGCAGGCAGTCTCCGCTGGAGCCGCTTCCCCGGAGTTTACCAAACTCTGCGC
TTGGCTGGTGTCTGAATTAAGAGTCCTTTGTAAACTAGAAGAAAATGTGCAGGCAACTAACAGTCCAAGC
GAAGCTGAAGAGTTCCAGCTTGAGGTGAGTGGGCTACTTGGGGAGATGAACTGCCCGTATCCTTCTCTGA
CATCCGGGGATGTAACCAAGCGCCTTCTTGTTGAGAAGAACTGCCTCCTTTTGCTCACATACCTCATCTC
AGAACTAGAAGCTGCCAGAATGCTCTGTGTGAATGCTCCTCCAAAAAAAGCTCAAGAAGGAGGCGGTAGT
GAGGTCTTTCAAGAGTTGAAAGGCATATGTATTGCTCTAGGAATGTCCAAACCTCCAGCCAATATAACTA
TGTTCCAATTCTTCAGCGGGATTGAGAAAAAATTAAAGGAAACATTAGCAAAAGTTCCGCCTAATCATGT
GGGAAAGCCGTTACTGAAGAAGCCGATGGGACCAGCCCACTGGGAAAAGATAGAAGCCATTAACCAAGCC
ATAGCCAATGAATATGAAGTCCGGAGGAAGCTGCTAATCAAACGCTTGGATGTCACCGTCCAGTCCTTTG
GCTGGTCTGACAGAGCTAAGAGTCAGACAGACAAACTAGCTAAGGTTTACCAGCCGAAGCGCTCACTCTT
GTCGCCTAAAGGTAAGGTCTCTGTTGCTCACCTTCTGGCCGCCAGACAAGACTTGTCAAAGATTTTAAGG
ACAAGCAGTGGGTCCATAAGAGAAAAGACTGCCTGTGCCATTAATAAGGTGCTGATGGGCAGGGTGCCTG
ACAGAGGCGGCAGACCTAATGAAATTGAACCTCCACCCCCAGAGATGCCACCGTGGCAGAAAAGACAAGA
TGGCCCCCAGCAGCAAGCAGGAGGCCGAGGCGGAGGGAGAGGTGGTTATGAACATTCCTCATACGGAGGA
CGAGGAGGTCATGAACAAGGAGGGAGAGGTGGACGTGGTAGCTATGACCACGGTGGCCGAGGGGGAGGAA
GAGGAAATAAACATCAAGGAGGCTGGACAGATGGAGGGAGTGGAAGTGGAGGTGGTTATCAGGACGGTGC
TTATCGAGATTCGGGCTTCCAGCCTGGTGGCTATCATGGTGGCCACAGTGGTGGCTACCAAGCTGGTGGC
TATGGTGGTTTCCAGACATCTTCATATACAGGAAGTGGCTACCAGGGCGGTGGATACCAGCAAGACAATA
GATACCAAGATGGTGGGCACCATGGTGAACGAGGCAGTGGTCGTGGGGGAAGAGGTGGTCGAGGGGGTCG
GGGAGGACGTGGAAGCCAGGGAGGAGGCTGGGGAGGAAGAGGGAGCCAGACTTATCATCAAGGGGGCCAG
TTTGAACAGCACTTCCAACATGGAGGCTATCAGTATAGTCATTCTGGATTTGGACAAGGAAGACATTATA
CTAGTTGA

Translation (515 aa):
MECDLMETDILESLEDLGYKGPLLDDGALLQAVSAGAASPEFTKLCAWLVSELRVLCKLEENVQATNSPS
EAEEFQLEVSGLLGEMNCPYPSLTSGDVTKRLLVEKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGS
EVFQELKGICIALGMSKPPANITMFQFFSGIEKKLKETLAKVPPNHVGKPLLKKPMGPAHWEKIEAINQA
IANEYEVRRKLLIKRLDVTVQSFGWSDRAKSQTDKLAKVYQPKRSLLSPKGKVSVAHLLAARQDLSKILR
TSSGSIREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQDGPQQQAGGRGGGRGGYEHSSYGG
RGGHEQGGRGGRGSYDHGGRGGGRGNKHQGGWTDGGSGSGGGYQDGAYRDSGFQPGGYHGGHSGGYQAGG
YGGFQTSSYTGSGYQGGGYQQDNRYQDGGHHGERGSGRGGRGGRGGRGGRGSQGGGWGGRGSQTYHQGGQ
FEQHFQHGGYQYSHSGFGQGRHYTS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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