NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, January 28, 2025, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40434.1 Public Mus musculus 8 Bbs2 23 108 98 CCDS HistoryNCBI Gene:67378Re-query CCDS DB by CCDS ID:40434.1Re-query CCDS DB by GeneID:67378See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034206.5 ENSMUSP00000034206.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034206.5Link to Ensembl Protein Viewer:ENSMUSP00000034206.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034206Re-query CCDS DB by Protein ID:ENSMUSP00000034206
Original member Current member NCBI NM_026116.3 NP_080392.1 Accepted alive Link to Nucleotide Sequence:NM_026116.3Link to Protein Sequence:NP_080392.1Re-query CCDS DB by Nucleotide ID:NM_026116Re-query CCDS DB by Protein ID:NP_080392Link to BLAST:NP_080392.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080392.1 721 Q9CWF6 721 100% 0 0

Chromosomal Locations for CCDS 40434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94068276 94068382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94069962 94070110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94074292 94074404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94075123 94075260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94076952 94077083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94079483 94079612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94080768 94080939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94081025 94081169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94081998 94082137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94082356 94082491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94086656 94086742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94086831 94086935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94087377 94087454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94089103 94089165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94089762 94089887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94092395 94092622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94098236 94098352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2166 nt):
ATGCTGCTGCCTGTGTTCACTCTGAAACTGCGCCACAAAATCAGCCCCCGCATGGTGGCCATAGGGCGCT
ACGACGGGACTCACCCGTGCTTGGCTGCCGCCACCCAAGCGGGCAAGGTTTTCATTCATAACCCTCACAC
GCGGAGCCAGCATTTCAGTGCTTCCAGAGTGTTCCAGAGCCCTCTGGAGTCTGATGTCTCTCTGCTCAAC
ATTAACCAGACGGTCAGCTGCCTGGGTTCGGGAGTCTTGAACCCTGAGCTTGGCTATGATACTCTTTTAG
TGGGGACACAGACCAGTCTTTTGGCTTACGACATCTACAATAATTCAGATTTGTTCTACAGAGAGGTCTC
AGATGGGGCAAATGCCATTGTGCTGGGGACCCTGGGAGACATTGCCCCACCTCTTGCAATCATCGGTGGA
AACTGTGCTCTGCAGGGTTTCGATCACGAAGGAAATGATCTCTTTTGGACGGTTACTGGAGACAATGTGC
ATTCCTTGGCTCTGTGTGACTTTGACGGTGATGGGAAGACAGAGCTTCTTGTTGGATCTGAAGATTTTGA
CATTCGAGTTTTTAAAGAAGATGAGATTGTGGCAGAAATGACAGAGACAGAGATAGTCACCTCTCTGTGT
CCTATGTATGGCAGTCGGTTTGGTTACGCCCTTTCTAATGGCACAGTTGGAGTTTATGACAAAACAGCCC
GGTACTGGAGAATTAAATCCAAAAACCATGCCATGAGCATCCATGCTTTTGACATTAATTCTGATGGAGT
GTGTGAACTGATAACCGGGTGGTCTAATGGGAAGGTTGATGCTCGCAGTGACCGGACTGGAGAGGTCATA
TTTAAAGACAACTTCTCTTCTGCTGTTGCTGGTGTGGTAGAGGGAGATTACCGGATGGATGGCCACGTAC
AGTTAATCTGCTGCTCAGTGGATGGGGAAATCCGAGGCTACCTGCCAGGCACAGCTGAGATGAAGGGGAA
CCTCCTGGACACAAGTGTGGAGCAGGACCTGATCCGAGAGCTGAGTCAGAAAAAGCAGAACCTGTTGCTA
GAACTTCGCAACTATGAGGAGAGCACCAAGGCAGAACTGAGCAGTCCCCTGAACGAGGCCGATGGGCAGA
AAGGCATAATCCCAGCCAATACCAGGCTCCACACAGCGCTCTCAGTCAATATGGGGAATGACTTACAAGA
TGCGCATGCGGAATTAGGCATTTCCACTTCCAATGATACTATCATCCGAGCAGTACTAATTTTTGCAGAG
GGAATTTTTGTGGGTGAAAGCCATGTGGTCCACCCCAGCATTCACAACCTTTCCAGCTCCCTCCGGGTAC
CAATTACACCTCCCAAAGATGTCCCTGTGGATCTGCACCTGAAAACCTTCGTGGGTTACAGAAGCAGCAC
CCAGTTCCATGTGTTTGAACTGACAAGACAGCTGCCCCGATTCACCATGTATGCATTGACAAGCCCAGAT
GCAGCTAGCGAGCCTGTCAGCTACGTGAACTTCAGTGTTGCCGAGCGCACACAGAGGATGGTCACGTGGC
TCAACCAGAACTTTCTGTTGCCAGAAGACAGTAACGTTCAGAATTCCCCGTTTCACGTCTGTTTCACATC
GTTACGCAATGGTGGCCAGCTCTACATAAAAATGAAACAAAGTGGTGAGATCACTGTGAATACTGACGAT
ATTGATCTAGCTGGTGACATCATCCAGTCGATCGCGTCCTTTTTTGCTATTGAAGACCTTCAGGTAGAAG
CAGATTTCCCTGTGTACTTCGAGGAACTACGGAAAGTGCTGGTGAAGGTGGATGAGTATCATTCAGTGCA
TCAAAAGCTCAGCGCCGACATGGCTGATAATTCTAACCTCATCCGAAGTTTGCTGGTCAGAGCGGAGGAT
GCTCGGCTGATGAGGGACATGAAAACAATGAAGAGTCGTTACATGGAGCTCTATGACCTTAATAAAGATT
TGCTGAATGGATACAAGATTCGCTGTAACAACCACACAGAACTGCTAGGAAACCTGAAGGCGGTGAACCA
AGCAATCCAAAGAGCAGGCCGTCTGCGCGTTGGAAAGCCAAAGAACCAGGTGATCAGTGCTTGTCGGGAT
GCGATTCGAAGCAACAACATCAACACCCTCTTCAGAATCATGCGAGTGGGCACTGCTCCTTCATAG

Translation (721 aa):
MLLPVFTLKLRHKISPRMVAIGRYDGTHPCLAAATQAGKVFIHNPHTRSQHFSASRVFQSPLESDVSLLN
INQTVSCLGSGVLNPELGYDTLLVGTQTSLLAYDIYNNSDLFYREVSDGANAIVLGTLGDIAPPLAIIGG
NCALQGFDHEGNDLFWTVTGDNVHSLALCDFDGDGKTELLVGSEDFDIRVFKEDEIVAEMTETEIVTSLC
PMYGSRFGYALSNGTVGVYDKTARYWRIKSKNHAMSIHAFDINSDGVCELITGWSNGKVDARSDRTGEVI
FKDNFSSAVAGVVEGDYRMDGHVQLICCSVDGEIRGYLPGTAEMKGNLLDTSVEQDLIRELSQKKQNLLL
ELRNYEESTKAELSSPLNEADGQKGIIPANTRLHTALSVNMGNDLQDAHAELGISTSNDTIIRAVLIFAE
GIFVGESHVVHPSIHNLSSSLRVPITPPKDVPVDLHLKTFVGYRSSTQFHVFELTRQLPRFTMYALTSPD
AASEPVSYVNFSVAERTQRMVTWLNQNFLLPEDSNVQNSPFHVCFTSLRNGGQLYIKMKQSGEITVNTDD
IDLAGDIIQSIASFFAIEDLQVEADFPVYFEELRKVLVKVDEYHSVHQKLSADMADNSNLIRSLLVRAED
ARLMRDMKTMKSRYMELYDLNKDLLNGYKIRCNNHTELLGNLKAVNQAIQRAGRLRVGKPKNQVISACRD
AIRSNNINTLFRIMRVGTAPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH