NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36551.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36551.1 Public Mus musculus 12 Vrk1 23 108 98 CCDS HistoryNCBI Gene:22367Re-query CCDS DB by CCDS ID:36551.1Re-query CCDS DB by GeneID:22367See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36551.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021539.15 ENSMUSP00000021539.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021539.15Link to Ensembl Protein Viewer:ENSMUSP00000021539.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000021539Re-query CCDS DB by Protein ID:ENSMUSP00000021539
Original member Current member EBI ENSMUST00000220629.1 ENSMUSP00000152109.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220629.1Link to Ensembl Protein Viewer:ENSMUSP00000152109.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220629Re-query CCDS DB by Protein ID:ENSMUSP00000152109
Original member Current member NCBI NM_001364367.1 NP_001351296.1 Accepted alive Link to Nucleotide Sequence:NM_001364367.1Link to Protein Sequence:NP_001351296.1Re-query CCDS DB by Nucleotide ID:NM_001364367Re-query CCDS DB by Protein ID:NP_001351296Link to BLAST:NP_001351296.1
Original member Current member NCBI NM_011705.4 NP_035835.1 Accepted alive Link to Nucleotide Sequence:NM_011705.4Link to Protein Sequence:NP_035835.1Re-query CCDS DB by Nucleotide ID:NM_011705Re-query CCDS DB by Protein ID:NP_035835Link to BLAST:NP_035835.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351296.1 440 Q80X41-1 440 100% 0 0
NP_035835.1 440 Q80X41-1 440 100% 0 0

Chromosomal Locations for CCDS 36551.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106036545 106036704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106042837 106042892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106050935 106051004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106051760 106051847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106055802 106055910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106056021 106056113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106057843 106057975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106058576 106058696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106059618 106059676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106062630 106062808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106070525 106070615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106071570 106071641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106073619 106073678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106075007 106075038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCCCCGTGTAAAAGCAGCTCAGGCTGGAAGACCCGGACCTGCGAAGAGGCGCCTCGCAGAGCAGTTTG
CCGCTGGAGAGGTCCTAACCGACATGTCTAGGAAGGAGTGGAAACTAGGATTGCCCATTGGCCAAGGTGG
CTTTGGCTGCATCTATCTGGCGGACACAAATTCTTCCAAACCGGTTGGCAGTGACGCGCCCTGTGTTGTG
AAAGTGGAACCCAGTGACAATGGACCTCTTTTCACGGAATTAAAGTTCTACCAGAGGGCTGCTAAACCAG
AGCAAATTCAGAAATGGATTCGTACACATAAATTGAAGTACCTTGGTGTTCCTAAGTATTGGGGATCTGG
TCTACATGATAAAAATGGAAAAAGTTACAGGTTTATGATAATGGACCGCTTTGGGAGTGACCTTCAGAAA
ATATATGAAGCAAATGCCAAAAGGTTTTCTCGGAAAACTGTATTGCAGCTAAGCTTAAGAATTCTGGATA
TCCTGGAGTACATCCATGAGCATGAGTACGTGCACGGGGACATCAAGGCCTCCAACCTGCTCCTGAGTCA
CAAGAACCCTGACCAGGTATATTTGGTAGACTATGGCCTTGCTTATCGGTACTGCCCAGATGGAGTTCAT
AAAGAGTACAAGGAAGATCCCAAAAGGTGCCATGACGGCACCCTGGAGTTCACCAGCATCGACGCTCACA
AAGGCGTGGCCCCATCAAGACGTGGTGATTTGGAAATACTTGGTTATTGCATGATCCAGTGGCTCAGCGG
CTGTCTTCCTTGGGAAGATAACTTGAAAGATCCTAACTACGTTAGGGATTCCAAAATTAGATACAGAGAC
AACGTCGCAGCTTTGATGGAGAAATGCTTTCCTGAGAAAAATAAGCCAGGTGAGATCGCTAAGTACATGG
AGTCTGTGAAACTACTGGAATACACCGAAAAACCTCTCTATCAAAACCTACGTGATATCCTTTTACAAGG
ACTAAAAGCTATAGGAAGTAAAGACGACGGCAAACTGGATTTTAGTGCTGTGGAGAACGGAAGTGTGAAG
ACAAGACCAGCCTCAAAGAAGCGGAAGAAAGAAGCAGAAGAAAGCGCGGTGTGCGCTGTGGAGGACATGG
AGTGCTCAGACACACAGGTGCAAGAGGCCGCACAGACCCGAAGTGTGGAGTCCCAAGGAGCAATACATGG
AAGCATGTCTCAGCCAGCGGCGGGCTGCAGCAGCTCTGACAGTTCCAGGAGGCAGCAGCATTTGGGATTG
GAACAAGACATGCTAAGGCTAGACCGTAGGGGTTCACGAACCAGAAAGAAAGCCCAGAAGTAA

Translation (440 aa):
MPRVKAAQAGRPGPAKRRLAEQFAAGEVLTDMSRKEWKLGLPIGQGGFGCIYLADTNSSKPVGSDAPCVV
KVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTHKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRFGSDLQK
IYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLSHKNPDQVYLVDYGLAYRYCPDGVH
KEYKEDPKRCHDGTLEFTSIDAHKGVAPSRRGDLEILGYCMIQWLSGCLPWEDNLKDPNYVRDSKIRYRD
NVAALMEKCFPEKNKPGEIAKYMESVKLLEYTEKPLYQNLRDILLQGLKAIGSKDDGKLDFSAVENGSVK
TRPASKKRKKEAEESAVCAVEDMECSDTQVQEAAQTRSVESQGAIHGSMSQPAAGCSSSDSSRRQQHLGL
EQDMLRLDRRGSRTRKKAQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH