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Report for CCDS26265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26265.1 Public Mus musculus 13 Elmo1 23 108 98 CCDS HistoryNCBI Gene:140580Re-query CCDS DB by CCDS ID:26265.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072519.6 ENSMUSP00000072334.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072519.6Link to Ensembl Protein Viewer:ENSMUSP00000072334.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072519Re-query CCDS DB by Protein ID:ENSMUSP00000072334
Original member Current member NCBI NM_080288.2 NP_525027.1 Accepted alive Link to Nucleotide Sequence:NM_080288.2Link to Protein Sequence:NP_525027.1Re-query CCDS DB by Nucleotide ID:NM_080288Re-query CCDS DB by Protein ID:NP_525027Link to BLAST:NP_525027.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_525027.1 727 Q8BPU7-1 727 100% 0 0

Chromosomal Locations for CCDS 26265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 20185427 20185504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20208134 20208174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20209139 20209211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20241573 20241623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20251004 20251173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20261557 20261592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20274520 20274619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20280812 20280963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20282912 20282990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20286720 20286770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20287891 20288013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20290362 20290493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20342368 20342472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20373082 20373190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20449470 20449606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20564424 20564587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20572345 20572457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20582219 20582326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20589644 20589726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20600180 20600257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 20605099 20605299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGCCGCCGCCTTCGGACATCGTGAAGGTGGCCATAGAATGGCCTGGCGCCTACCCTAAACTCATGGAGA
TTGACCAGAAAAAGCCACTGTCTGCCATTATAAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGA
ATATTTTGCACTGCAGCACGCTGATAGTTCAAACTTCTACATCACAGAAAAGAATCGCAACGAAATAAAA
AATGGCACGATCCTTCGATTAACCACATCTCCAGCTCAGAATGCCCAGCAGCTCCATGAACGAATACAGT
CATCAAGTATGGATGCCAAGTTGGAAGCCCTGAAGGACTTGGCCAGCCTCTCCCGGGATGTTACCTTTGC
TCAGGAGTTCATAAACCTGGATGGCATCTCACTTCTCACTCAGATGGTGGAAAGTGGCACTGAACGATAC
CAGAAGTTGCAGAAGATTATGAAGCCCTGCTTTGGAGACATGCTGTCCTTCACTCTCACAGCCTTTGTGG
AGTTGATGGACCACGGCATTGTATCATGGGATACATTCTCAGTGGCCTTCATTAAGAAGATAGCCAGCTT
TGTGAACAAGTCTGCCATAGACATCTCAATCCTCCAGCGGTCCTTGGCCATTCTGGAGTCAATGGTTCTC
AACAGTCATGACCTCTACCAAAAGGTAGCCCAGGAGATCACCATTGGCCAACTCATTCCTCATCTTCAGG
GGACAGACCAAGAAATACAAACTTACACCATTGCTGTAATCAACGCACTTTTCCTCAAAGCTCCTGATGA
GAGGAGACAGGAGATGGCGAATATTTTGGCTCAGAAGCAGCTGCGCTACATCATTTTAACACATGTCATC
CGAGCACAGCGGGCCATCAACAATGAGATGGCACACCAGTTATATGTTCTCCAAGTGCTGACCTTTAACC
TTCTGGAAGACAGGATGATGACTAAGATGGACCCCCAGGACCAGGCCCAAAGGGACATCATATTTGAACT
TCGAAGAATTGCTTTCGATGCAGAGTCAGAACCTAATAACAGCAGTGGCAGCATGGAGAAACGCAAGTCC
ATGTACACTCGGGATTATAAAAAACTTGGCTTCATTAATCACGTCAATCCTGCCATGGACTTCACACAGA
CCCCTCCTGGGATGCTGGCTCTGGACAACATGCTGTATTTCGCTAAGCACCACCAGGATGCATACATCCG
GATCGTGCTAGAGAACAGCAGCCGAGAAGATAAACATGAGTGCCCCTTCGGCCGCAGCAGTATAGAGCTG
ACCAAGATGCTGTGTGAGATCCTCAAAGTGGGCGAGCTGCCTAGTGAGACCTGCAACGACTTTCACCCGA
TGTTCTTCACCCATGACAGATCTTTTGAGGAATTCTTCTGCATTTGCATTCAACTCCTGAACAAAACATG
GAAGGAAATGAGGGCAACATCTGAAGACTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGA
GCGCTTACAACCAAGCCTAGTTCCCTGGACCAGTTCAAAAGCAAGCTGCAAAACCTGAGCTACACCGAGA
TCCTGAAAATCCGCCAGTCTGAGAGGATGAACCAGGAAGATTTCCAGTCTCGCCCGATTTTGGAACTAAA
GGAGAAGATCCAGCCAGAAATCTTAGAGCTGATTAAACAGCAGCGCCTGAACCGCCTTGTGGAAGGGACC
TGCTTTAGGAAACTCAATGCTCGCCGGAGACAAGACAAGTTTTGGTATTGTCGGCTTTCACCAAATCACA
AGGTCTTACATTATGGCGACTTGGAAGAGAGCCCCCAAGGAGAAGTGCCCCACGATTCCCTGCAGGACAA
ATTGCCGGTGGCAGATATCAAAGCAGTGGTGACGGGAAAGGACTGCCCTCATATGAAAGAGAAAGGTGCC
CTTAAACAAAACAAGGAGGTGCTTGAACTTGCTTTCTCCATCTTATACGACTCAAATTGCCAACTGAACT
TCATTGCTCCTGATAAGCATGAGTACTGCATCTGGACAGATGGGCTGAATGCACTGCTTGGGAAGGACAT
GATGAGTGACCTGACACGCAATGACCTGGACACCCTGCTGAGCATGGAGATCAAGCTTCGCCTGCTGGAC
CTGGAAAACATCCAGATCCCGGATGCACCTCCGCCTATCCCCAAGGAACCTAGCAACTATGACTTTGTCT
ATGACTGTAACTGA

Translation (727 aa):
MPPPSDIVKVAIEWPGAYPKLMEIDQKKPLSAIIKEVCDGWSLANHEYFALQHADSSNFYITEKNRNEIK
NGTILRLTTSPAQNAQQLHERIQSSSMDAKLEALKDLASLSRDVTFAQEFINLDGISLLTQMVESGTERY
QKLQKIMKPCFGDMLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKSAIDISILQRSLAILESMVL
NSHDLYQKVAQEITIGQLIPHLQGTDQEIQTYTIAVINALFLKAPDERRQEMANILAQKQLRYIILTHVI
RAQRAINNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKS
MYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIEL
TKMLCEILKVGELPSETCNDFHPMFFTHDRSFEEFFCICIQLLNKTWKEMRATSEDFNKVMQVVKEQVMR
ALTTKPSSLDQFKSKLQNLSYTEILKIRQSERMNQEDFQSRPILELKEKIQPEILELIKQQRLNRLVEGT
CFRKLNARRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGA
LKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNALLGKDMMSDLTRNDLDTLLSMEIKLRLLD
LENIQIPDAPPPIPKEPSNYDFVYDCN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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