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Report for CCDS48386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48386.1 Public Mus musculus 1 F13b 23 108 98 CCDS HistoryNCBI Gene:14060Re-query CCDS DB by CCDS ID:48386.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027615.6 ENSMUSP00000027615.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027615.6Link to Ensembl Protein Viewer:ENSMUSP00000027615.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027615Re-query CCDS DB by Protein ID:ENSMUSP00000027615
Original member Current member NCBI NM_031164.2 NP_112441.2 Accepted alive Link to Nucleotide Sequence:NM_031164.2Link to Protein Sequence:NP_112441.2Re-query CCDS DB by Nucleotide ID:NM_031164Re-query CCDS DB by Protein ID:NP_112441Link to BLAST:NP_112441.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112441.2 669 Q07968 669 100% 0 0

Chromosomal Locations for CCDS 48386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 139501746 139501812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139503761 139503961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139506766 139506951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139507573 139507749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139508089 139508265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139510457 139510636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139510848 139511033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139512982 139513164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139516287 139516487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139517172 139517354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139522343 139522556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 139523373 139523427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGATGACGCTGAGACACTTGCCATTTATTCTTTTATTAATCCTCTCAGGAGAACTCTATGCAGAAGAGA
AACAGTGTGATTTTCCTACCGTGGAAAATGGAAGGATTGCCCAATATTATTATACGTTTAAAAGCTTTTA
CTTCCCCATGAGCGTAGACAAAAAACTATCATTCTTCTGTTTGGCTGGCTATGCAACCGAAAGTGGGAAG
CAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACAAGAAATGTCTGA
AGCCTGACCTAAGGAATGGCTACGTCTCCAATGACAAAGTACTGTACAAACTTCAAGAGAGGATGAGCTA
CGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGG
TGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCCCCTGAGTTGGAACATGGAAATT
ACTCCACGACGCAGAGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACAC
CACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAGTGCAAC
AAATTAATGTGCTCTTCTTTGAGATTAATAGAAAATGGCTATTTTCATCCTGTAAAGCAAACATATGAAG
AAGGAGATGTAGTTCAATTTTTCTGTCATGAAAATTATTATCTAAGTGGATCTGATTTAATTCAGTGCTA
TAACTTTGGCTGGTATCCAGAATCTCCCATATGTGAAGGAAGAAGAAATCGATGTCCTCCTCCACCTGTG
CCTCTAAATTCTAAAATTCAACCACATTCAACAACTTACCGTCACGGAGAAAGAGTGCATATAGAATGTG
AACTTAATTTTGTGATTCAGGGTTCAGAAGAACTGCTCTGTGAAAATGGGAAGTGGACAGAACCTCCAAA
ATGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCA
CACTCTGAGATTTACTACAGTGGGGATAAAGTGACATACAGGTGTGGAGGGGGCTACAGTCTCAGAGGAT
CAAGTACGATAACTTGCAATCGTGGCCGATGGACACTGCCCCCTGAGTGTGTTGAAAATATTGAGAATTG
TAAGCCTCCTCCTGACATAGCAAACGGTGTGGTTGTTGATGGGTTACTGGCAAGTTACACAACAGGATCT
TCTGTGGAGTACCGATGCAATGAGTATTACTTATTGAAGGGGTCGGAAACATCTCGCTGTGAACAAGGAG
CGTGGTCATCTCCACCTGTCTGCTTGGAGCCCTGCACTATTGATGTGGATCACATGAACAGGAATAACAT
ACAGTTGAAGTGGAAATATGAGGGCAAGATTTTACATGGAGACCTAATAGATTTTGTGTGTAAGCAGGGA
TATAACTTGTCACCATCAATCCCACTGTCGGAGATATCTGCGCAGTGCAATAGAGGCGATGTGAGGTACC
CCATGTGCATTAGAAAAGAATCTAAAGGGATGTGTGCATCTCCTCCAGTGATAAGAAATGGAGATATTGT
TAGTTCAGCAGCCCGCACCTATGAAAACGGCTCCTCAGTAGAATACCGGTGTTTTGATAATCATTTCCTA
CAAGGGTCCCAGAATGTCTATTGTGTCGATGGAGTGTGGACTACACCACCATCGTGTCTAGAGCCTTGCA
CATTATCATTTGTTGAAATGGATAAGAATTATTTACAGCTGAAATGGAATTTTGACAACAGACCACTCAT
TTTACATGGAGAGTATATTGAGTTTATGTGTAAGAGAGATGCATATATAAGTGAGACATCTATTGCTGGG
TCTGTACTTCGGGTGCAGTGTGACAGGGGAAGGCTGAAATACCCTAAGTGTACTCCAAGAGACAGGAGGC
TGTCCTTTCAGGAAGCATTACGGACCCGAAGACAAATGGAAAAAAGATAA

Translation (669 aa):
MMTLRHLPFILLLILSGELYAEEKQCDFPTVENGRIAQYYYTFKSFYFPMSVDKKLSFFCLAGYATESGK
QEEQIRCTAEGWSPNPRCYKKCLKPDLRNGYVSNDKVLYKLQERMSYGCSSGYKTTGGKDEEVVHCLSAG
WSSQPSCRKEQETCLAPELEHGNYSTTQRTFKVKDIVAYTCTAGYYTTTGKQTGEAECQANGWSLTPQCN
KLMCSSLRLIENGYFHPVKQTYEEGDVVQFFCHENYYLSGSDLIQCYNFGWYPESPICEGRRNRCPPPPV
PLNSKIQPHSTTYRHGERVHIECELNFVIQGSEELLCENGKWTEPPKCIEEKEKVACEQPPSVENGVAHP
HSEIYYSGDKVTYRCGGGYSLRGSSTITCNRGRWTLPPECVENIENCKPPPDIANGVVVDGLLASYTTGS
SVEYRCNEYYLLKGSETSRCEQGAWSSPPVCLEPCTIDVDHMNRNNIQLKWKYEGKILHGDLIDFVCKQG
YNLSPSIPLSEISAQCNRGDVRYPMCIRKESKGMCASPPVIRNGDIVSSAARTYENGSSVEYRCFDNHFL
QGSQNVYCVDGVWTTPPSCLEPCTLSFVEMDKNYLQLKWNFDNRPLILHGEYIEFMCKRDAYISETSIAG
SVLRVQCDRGRLKYPKCTPRDRRLSFQEALRTRRQMEKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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