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Report for CCDS52783.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52783.1 Public Mus musculus 9 Cep164 23 108 98 CCDS HistoryNCBI Gene:214552Re-query CCDS DB by CCDS ID:52783.1Re-query CCDS DB by GeneID:214552See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52783.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117194.7 ENSMUSP00000114053.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117194.7Link to Ensembl Protein Viewer:ENSMUSP00000114053.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117194Re-query CCDS DB by Protein ID:ENSMUSP00000114053
Original member Current member NCBI NM_001081373.3 NP_001074842.2 Accepted alive Link to Nucleotide Sequence:NM_001081373.3Link to Protein Sequence:NP_001074842.2Re-query CCDS DB by Nucleotide ID:NM_001081373Re-query CCDS DB by Protein ID:NP_001074842Link to BLAST:NP_001074842.2

Chromosomal Locations for CCDS 52783.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 45768258 45768363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45768521 45768643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45769409 45769475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45770695 45771057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45771531 45771642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45772282 45772389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45773818 45774025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45774442 45774509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45774784 45774907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45775192 45775367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45775677 45775745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45775865 45775948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45776783 45776926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45778408 45778530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45778797 45778928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45779143 45779220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45779382 45779610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45779690 45779836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45785778 45785921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45787426 45787511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45791083 45791166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45792932 45793012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45794052 45794429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45801465 45801542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45802643 45802777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45803173 45803328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45809704 45809908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45817978 45818089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 45823646 45823727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4002 nt):
ATGGCTAGACGGCCCATCCTTTTAGGTGACCAGCTGGTCCTGGAGGAAGATTCTGATGAGACCTACGTTC
CCAGTGAGCAAGAAATCCTTGACTTTGCCAGAGTGATTGGTATTGACCCTATCAAGGAACCAGAACTGAT
GTGGCTGGCGAGAGAGGGTATTGAGGCTCCATTGCCCAAGGGCTGGAAACCATGCCAGAACATCACAGGT
GATCTTTACTATTTCAACTTTGACACGGGGCAGTCCATCTGGGACCATCCATGTGACGAGCACTATCGAA
AGTTGGTCATCCAGGAGAGGGAGAGGTGGTCAGCTCCCGGGGCCATTAAGAAGAAAGACAAGAAAAAGAA
AAAGGAAAAGAAAAACAAGAAGGACAAAGAGACCTCCAAAAGTCCTCTGGTCCTGGGTTCCCCCTTAGCT
CTAGTCCAGGCCCCTCTTTGGGGCCTGGCTCCCTTACGAGGCCTTGGGGATGCCCCACCCTCTGCTCTTC
GTGGGTCGCAGAGCGTGAGCTTGGGCAGCTCAGCGGATTCTGGGCATCTTGGGGAGCCCACGCTGCCTCC
ACAGGGTCTCAAGGCTGCTGCTTGTGCAAAGGGTCTCTTGGCTTCTGTCCATGAGGGCAAGAATGCTCTC
AGCCTCTTGACTTTAGGGGAAGAGACCAACGAGGAGGATGAAGAGGAGAGTGACAACCAGAGTGTCCGGA
GCTCCAGTGAACTTCTCAAGAACCTACATCTGGACCTTGGTGCCCTGGGAGGTAACTTTGAGTACGAGGA
GTCTCCAAGAACCAGCCAGCCAGACAAGAAAGATGTTTCTCTGGACTCAGATGCCGATCGCCCCCCAACT
CCCGGCAAGCTGTTCAGCCAGGGTGCAGACAGTAGTGTGGCCAGTGCCAATGGCAGCAAGTCCCAAGGAA
GAGGGGCAAGTCCCTGGAACCCACAGAAAGAAAACGAGAATAGTGATCCCAAGGCTTCTTCAAGTCAGAT
GGCTCCCGAGTTGGACCCCGGGGGTGATCAGCCTTCCAGGGCCTCTAAAAAGCAGCAGGCAGAGGACCCA
GTGCAGGCAGGAAAGGAGGGAGAGTGCAGGAGGGAGAGTGCAGCCAAGGAGCCAAAGGAGGCTTCTGCCT
TGGAGAACACCTCAGATGTCAGTGAGGAGTCAGAGATCCACGGACACTTGAAGGACGCCCGGCACTCAGG
GTCCGAAGCTTCTGGCCCTAAGTCTTTCCTGGGCCTGGACTTGGGCTTTCGCAGCCGCATCTCGGAGCAT
CTGCTGGATGGTGACACACTTTCTCCAGTCTTGGGTGGAGGCCACTGGGAGGCCCAGGGGTTAGACCAAG
AAGAACAAGATGACAGCAAATCCAGCATCGCTGAGCCACAGAGCAAGCATACCCAAGGCTCCGAGAGGGA
ACATCTCCAGAGTAGCCTTCACAGCCAGGCTACTGAGGAAGGGCCTTTGCAGACCCTGGAGGGGCAGCCT
GAGTGGAAGGAAGCAGAGGGACCTGGGAAGGACTCTGTAGCCAGCCCCGCCCCACTGTCCCTCCTCCAGA
GCCTCCTGAAAGCACAGCTACAGAAAGCCACCGCTGAGGAGAAGGAGAAGGAAGAGGAGACTAAGATAAG
AGAGGAGGAAAGCCGGAGGCTGGTCTGCCTCCGGGCCCAGGTGCAGTCCAGGACTGAGGCTTTTGAGAAC
CAAATTAGAACCGAGCAACAGGCTGCCCTACAGAGGCTTCGAGAAGAGGCCGAGACTCTCCAGAAAGCTG
AAAGAGCCAGCTTGGAACAGAAAAGCAGGAGGGCACTGGAGCAGCTGAGGGAGCAGCTGGAGGCCGAGGA
GAGGAGTGCCCAGGCTGCCTTGAGGGCAGAGAAGGAGGCGGAGAAGGAGGCCGCTCTGCTGCAGCTGAGG
GAGCAGCTGGAAGGGGAGAGGAAGGAAGCAGTGGCAGGCCTAGAGAAGAAGCACAGCGCTGAGCTGGAAC
AGCTCTGTTCCTCACTGGAAGCCAAACACCAGGAGGTGATCTCCAGCCTCCAGAAGAAGATAGAGGGAGC
TCAGCAGAAAGAGGAGGCCCAATTACAGGAGAGCCTTGGGTGGGCCGAGCAGAGAGCTCACCAGAAGGTT
CACCAGGTGACCGAGTATGAACAGGAGCTCAGCAGCCTCCTTCGAGACAAGCGCCAGGAGGTAGAGAGGG
AACACGAGCGGAAGATGGACAAGATGAAGGAGGAGCACTGGCAAGAGATGGCTGACGCCAGAGAGCGATA
CGAAGCCGAGGAGAGAAAGCAGCGGGCTGACCTCCTGGGGCACCTGACTGGAGAGCTGGAGCGCCTGCGA
AGGGCCCACGAGCGGGAGTTAGAGAGTATGAGGCAGGAGCAGGACCAGCAGCTTGAAGACCTGAGGCGTC
GACACCGCGACCATGAAAGGAAATTACAAGACTTAGAGGTGGAACTCTCGTCCAGAACTAAAGATGTCAA
GGCCAGACTAGCTCAGCTGAATGTTCAGGAGGAGAACATACGGAAAGAGAAGCAGCTGCTCCTGGATGCG
CAGAGGCAGGCTGCTCTGGAGAGGGAGGAAGCCACAGCCACCCACCAGCACCTGGAAGAAGCCAAGAAAG
AGCACACACACCTGCTGGAGACGAAGCAGCAGCTGCGAAGGACCATCGATGACCTGAGGGTCCGGCGGGT
GGAGCTGGAGTCCCAAGTGGACCTGTTGCAGGCGCAGAGTCAGAGATTGCAGAAGCACCTGAGCAGCCTA
GAGGCCGAAGTACAAAGGAAGCAGGATGTCTTGAAAGAGATGGCAGCTGAGATGAATGCTTCCCCACACC
CGGAGCCAGGGCTCCACATTGAGGACCTGAGGAAATCCCTTGACACAAATAAGAACCAAGAGGTGTCCTC
TTCTCTCTCCCTGAGTAAGGAGGAGATCGACCTGTCTATGGAGAGTGTCCGACAGTTCCTCTCTGCTGAG
GGTGTAGCTGTGCGCAACGCTAAGGAGTTCCTGGTGCGCCAGACACGCTCCATGCGGAGGCGACAGACAG
CTCTGAAAGCCGCCCAGCAGCACTGGCGCCATGAGCTGGCCAGTGCCCAGGAGGTAGACGAAGACCTGCC
AGGCACCGAGGTCCTGGGAAACATGCGCAAGAACTTGAATGAGGAGACCAGGCACCTGGATGAGATGAAG
TCAGCCATGCGCAAAGGCCATGACTTGTTGAAGAAGAAAGAGGAGAAGCTGATCCAACTGGAATCTTCTC
TTCAGGAGGAGGTCTCTGACGAGGACACTCTGAAAGGATCCTCTATCAAGAAGGTGACCTTTGATCTCAG
TGACATGGACGATTTGAGCAGTGAGAGTCTTGAGTCCAGCCCCGTGCTGCACATCACCCCGACCCCGACC
TCTGCTGATCCCAACAAGATCCATTACCTGAGCAGCTCCCTTCAGCGAATCAGCAGTGAGCTAAACGGCG
TGCTGAATGTGCTGGGAAGCCTCAACTCCCAGCCGCCGCCCCAGGGCCTCGGCAGCCAGCCCCCGCCTCC
ACTCTTCACCTCCTCACTTCGGTCCTCCAAGAATGTCCTTGACCCTGCCTACTCCTCCCAGGCCAAGCTC
TCCTCCTTATCTTCCATCACACCCATGTCCACCCAGTGGGCCTGGGACCCAGGGCAGGGCACCAAGCTGA
CCTCTTCCTCCTCCTCTCAAACTGTGGATGATTTCCTGCTGGAGAAGTGGCGCAAGTATTTTCCCTCTGG
CATCCCGTTGCTCAGTGGCTCTCCTCCCCCACCGGAGAACAAGCTGGGTTATGTGTCTGTAAGTGAGCAG
CTCCACTTCCTGCAGCGCTCCCACCCTCGAGTCCCCAGGACGGATGGTGTCAGCATTCAGAGCTTGATCG
ATTCCAACCGGAAGTGGCTGGAACATTTCCGGAACGACCCCAAGGTACAGCTTTTCTCCTCGGCGCCCAA
AGCAACAACCACATCGAACTTATCGAACCTCCTGCAGCTGGGCCTGGACGAGAACAACAGACTGAATGTG
TTTCATTACTGA

Translation (1333 aa):
MARRPILLGDQLVLEEDSDETYVPSEQEILDFARVIGIDPIKEPELMWLAREGIEAPLPKGWKPCQNITG
DLYYFNFDTGQSIWDHPCDEHYRKLVIQERERWSAPGAIKKKDKKKKKEKKNKKDKETSKSPLVLGSPLA
LVQAPLWGLAPLRGLGDAPPSALRGSQSVSLGSSADSGHLGEPTLPPQGLKAAACAKGLLASVHEGKNAL
SLLTLGEETNEEDEEESDNQSVRSSSELLKNLHLDLGALGGNFEYEESPRTSQPDKKDVSLDSDADRPPT
PGKLFSQGADSSVASANGSKSQGRGASPWNPQKENENSDPKASSSQMAPELDPGGDQPSRASKKQQAEDP
VQAGKEGECRRESAAKEPKEASALENTSDVSEESEIHGHLKDARHSGSEASGPKSFLGLDLGFRSRISEH
LLDGDTLSPVLGGGHWEAQGLDQEEQDDSKSSIAEPQSKHTQGSEREHLQSSLHSQATEEGPLQTLEGQP
EWKEAEGPGKDSVASPAPLSLLQSLLKAQLQKATAEEKEKEEETKIREEESRRLVCLRAQVQSRTEAFEN
QIRTEQQAALQRLREEAETLQKAERASLEQKSRRALEQLREQLEAEERSAQAALRAEKEAEKEAALLQLR
EQLEGERKEAVAGLEKKHSAELEQLCSSLEAKHQEVISSLQKKIEGAQQKEEAQLQESLGWAEQRAHQKV
HQVTEYEQELSSLLRDKRQEVEREHERKMDKMKEEHWQEMADARERYEAEERKQRADLLGHLTGELERLR
RAHERELESMRQEQDQQLEDLRRRHRDHERKLQDLEVELSSRTKDVKARLAQLNVQEENIRKEKQLLLDA
QRQAALEREEATATHQHLEEAKKEHTHLLETKQQLRRTIDDLRVRRVELESQVDLLQAQSQRLQKHLSSL
EAEVQRKQDVLKEMAAEMNASPHPEPGLHIEDLRKSLDTNKNQEVSSSLSLSKEEIDLSMESVRQFLSAE
GVAVRNAKEFLVRQTRSMRRRQTALKAAQQHWRHELASAQEVDEDLPGTEVLGNMRKNLNEETRHLDEMK
SAMRKGHDLLKKKEEKLIQLESSLQEEVSDEDTLKGSSIKKVTFDLSDMDDLSSESLESSPVLHITPTPT
SADPNKIHYLSSSLQRISSELNGVLNVLGSLNSQPPPQGLGSQPPPPLFTSSLRSSKNVLDPAYSSQAKL
SSLSSITPMSTQWAWDPGQGTKLTSSSSSQTVDDFLLEKWRKYFPSGIPLLSGSPPPPENKLGYVSVSEQ
LHFLQRSHPRVPRTDGVSIQSLIDSNRKWLEHFRNDPKVQLFSSAPKATTTSNLSNLLQLGLDENNRLNV
FHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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