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Report for CCDS39175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39175.1 Public Mus musculus 5 Bmp2k 23 108 98 CCDS HistoryNCBI Gene:140780Re-query CCDS DB by CCDS ID:39175.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035635.9 ENSMUSP00000037970.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035635.9Link to Ensembl Protein Viewer:ENSMUSP00000037970.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035635Re-query CCDS DB by Protein ID:ENSMUSP00000037970
Original member NCBI NM_080708.1 NP_542439.1 Updated not alive Link to Nucleotide Sequence:NM_080708.1Link to Protein Sequence:NP_542439.1Re-query CCDS DB by Nucleotide ID:NM_080708Re-query CCDS DB by Protein ID:NP_542439
Current member NCBI NM_080708.2 NP_542439.1 Accepted alive Link to Nucleotide Sequence:NM_080708.2Link to Protein Sequence:NP_542439.1Re-query CCDS DB by Nucleotide ID:NM_080708Re-query CCDS DB by Protein ID:NP_542439Link to BLAST:NP_542439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542439.1 1138 Q91Z96-1 1138 100% 0 0

Chromosomal Locations for CCDS 39175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 96997928 96998096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97027831 97027949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97031137 97031242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97036896 97037038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97038421 97038542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97040673 97040754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97045035 97045167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97053097 97053200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97054852 97054931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97056866 97057026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97061406 97061656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97063445 97063543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97064829 97065013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97068399 97068556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97074633 97074743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97086743 97088136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3417 nt):
ATGAAGAAGTTCTCTCGGATGCCCAAGTCGGAGGGCAGCGGCGGCGGGGCGGCGGCTGGCGGGGCCGCGG
GCGGCGGGCTCGGCGGCGGCTTCGCAAGCTCGTCCATGGGGGTCCGGGTGTTCGCCGTCGGCCGCTACCA
GGTCACCCTGGAGGAGTCGCTGGCCGAAGGTGGATTCTCCACTGTTTTCCTGGTGCGGACTCACAGTGGG
ATCCGATGTGCACTGAAGCGAATGTATGTCAATAACACACCCGACCTCAACATTTGTAAAAGGGAAATCA
CGATTATGAAAGAGTTATCTGGCCACAAAAATATTGTCGGTTATTTGGACTGTGCTGTCAATTCAATTAG
TGACAATGTGTGGGAAGTGCTTATCTTAATGGAATATTGTCGAGCTGGGCAGGTTGTGAACCAGATGAAT
AAGAAGCTGCAGACAGGCTTTACCGAGTCAGAAGTCCTACAAATCTTCTGTGATACCTGCGAAGCTGTCG
CACGATTGCATCAATGTAAGACTCCCATAATCCACCGGGATCTGAAGGTAGAAAATATTTTGCTAAATGA
TGCTGGAAATTATGTGCTTTGTGACTTTGGCAGTGCCACTAATAAATTTCTCAATCCTCAAAAAGATGGA
GTTAATGTAGTAGAAGAAGAAATTAAAAAATACACGACTCTGTCGTATAGAGCACCAGAAATGATCAACC
TTTATGGAGGGAAACCGATCACCACCAAGGCTGATATCTGGGCCTTGGGATGTTTACTGTATAAACTTTG
TTTCTTCACTCTTCCTTTTGGTGAGAGTCAGGTTGCTATCTGTGATGGCAGCTTCACCATCCCAGACAAT
TCTCGCTACTCCCACAACGTGCATTGCTTGATTAGGTTCATGCTTGAACCAGACCCCGAGTGCAGACCTG
ACATATTTCAAGTATCCTACTTTGCGTTTAAATTCGCCAAAAAGGATTGTCCGGTCTCCAACATCAATAA
TTCTTTTCTTCCATCAACTCTTCCCGAGCCGATGACTGCTACTGAAGCTGCTGCTAGGAAAAGCCAGATG
AAAGCCAGAATAACAGATACCATTGGACCAACAGAAACCTCAATTGCACCAAGACAAAGACCAAAGGCCA
ATTCCACTGCTGCCACTTCCAGTGTGCTGACCATTCAGAGTTCAGCAACGCCTGTCAAAGTCCCTGCTCC
TGGGGAGTTCAGCAACCACAAACCCAAAGGAGCATTGAGACCTGGAAATGGGTCTGAAGTCTTAATGGTT
CAGGGACCCCCTCAGCAACCCCCACAGCAGCATAGAGTCCTCCAGCAGTTGCAGCAGGGAGACTGGAGAT
TACAGCAACTTCATTTGCATCGTCATCCCCACCACCACCATCAGCAACAGCAACAACAGCAACAACAACA
GCAGCAACAACAGCTGCAGCAACAACAGCAACAGCAACAGCAACTACTTCAAAATGCTTACTTGCAGCAG
TATCAGCATGCAATGCACCAGCAGCATATACTTCAGCAACAGTTTCTAATGCACTCAGTGTATCAGCCAC
AACCGCCTGCATCCCAGTATCCTGCCATGATGCAGCAGTATCAGCAGGCTTTCTTGCAGCAGCAGATGCT
AGCTCGCCATCAGCAGCCAGCACAGCAGGTATCACCCGAGTATCTTACCTCCCCGCAAGAGTTCTCACCA
GCCTTAGTTTCCTACGCCTCGTCACTTCCAGCTCAGGTTGGAACCATAGTGGACTCTTCTTACGGTGCCA
ACAGGTCAGTTGCTGAGAAAGAGGCAGTTGCAAATTTTACAAATCAGAAGACCATTAGTCACCCTCCTGA
CATGTCAGGCTGGAATCCTTTTGGAGAAGACAATTTTTCCAAGTTAACAGAAGAGGAACTGTTGGACAGA
GAATTTGACCTTCTAAGATCAAACAGGCTCGGGGCGAGCACACCCTCAGATAAGACTGTAGACCTGCCCC
CCGCTCCACATAGCCGTCCTCCGGAGGAGCCTTTTGCTTCCGTCCCTTTCATTTCTCACTCAGGTTCTCC
TGAAAAGAAAACGACGGAACATTCTCCAAATCAAAAATCTATCACTGCAAACCTTACCAAAAATGGAGGC
TCAAGTCCACTATGTAAAGATCAGCGAGCCGGAAAGAAAACCTCCGAGAATCCCGTAATTAGGGGTCAAG
TACAAAAGGGACATGATGATTCTGAAAGTGATTTCGAATCAGACCCCCCTTCTCCTAAGAGCAGTGAAGA
AGAACAAGAGGATGAAGACGCACAGGGAGAACACGGGGACTTTAATGATGACGACACTGAGCCGGAGAAC
CTGGGTCACAGGCCTCTGCTGATGGACTCTGAAGATGAGGAAGAGGACGACAAACACAGCTCTGATTCAG
AGTGTGAACAGGCAAAGACCAAGAGAGGAGACACGAGCTCCCTGCGCAGGGACAAACCTGGCGTGGCCCC
AGACACAGCCCTCCTGACCCCGGCCCGCTCGCCTGCTGATGCGCTGACTCCCAGTCAGGAGTTCGATGTG
TTTGGCGCTGTTCCCTTCTTTGCAGCGCCTGCTCCGCAGAGCCTGCAGCACAGAGGGGATGGGAAGAACC
TGTCCCAGCATGCTTTTCCAGAGCAGGAGGACTTCGACGTGTTCACAAAGGCACCCTTCAACAAGAAGGT
CAGCGTACAGGACTGGCCCGCGGTGGGGCCAGATGCCCGGCCTCTGCCTGCACGGCCCAGAAGTGTAGAT
ATATTTGGCTCCACTCCCTTCCAGCCCTTCTCCGTGTCAGCCAGTAAAAGTGAAAGCAAGGAGGATGTTT
TTGGGCTCGTGCCCTTTGAGGAAATAACTGGGAGTCAGCAGCAGCAGAAAGTCAAGCAGCGCAGCTTGCA
GAAACTCTCCTCTCGCCAGAGACGCACAAAGCAGGATGTGTCCAAAAGCAATGGGAAGCGCCATCACGGC
ACCCCTACCAGCGCAAAGAAGACGCTGAAGCCCCCCTACCGCACGCCCGAGAGGGCCCGCAGACACAAGA
AGGTGGGCCGCAGAGACTCCCAGAGCAGCAATGAGTTTTTAACCATTTCCGATTCCAAGGAGAACATCAG
CGTCGCGCTGACTGATGGCAAAGACAGGGCCAGTGTCCTGCCATCTGACGAGAGTCTGCTGGACCCATTC
GGTGCCAAGCCCTTTCATCCTCCAGACTTGTGGCACCAGCCCCATCAGGGCCTAAGCGACATCTGCGTTG
ATCACACCACCATTTTGCCTGGGAGGCCGCGACAGAATTCAGTACACGGGTCCTTCCACAGCGCAGAGAC
ATTGAGAATGGATGACTTTGGTGCCGTGCCCTTTACAGAACTCGTGGTGCAAAGTGTCACTCCACAACAG
TCCCAACCGGTCGAACTAGACCCCTTTGGTGCTGCTCCATTTCCTTCTAAACAGTAG

Translation (1138 aa):
MKKFSRMPKSEGSGGGAAAGGAAGGGLGGGFASSSMGVRVFAVGRYQVTLEESLAEGGFSTVFLVRTHSG
IRCALKRMYVNNTPDLNICKREITIMKELSGHKNIVGYLDCAVNSISDNVWEVLILMEYCRAGQVVNQMN
KKLQTGFTESEVLQIFCDTCEAVARLHQCKTPIIHRDLKVENILLNDAGNYVLCDFGSATNKFLNPQKDG
VNVVEEEIKKYTTLSYRAPEMINLYGGKPITTKADIWALGCLLYKLCFFTLPFGESQVAICDGSFTIPDN
SRYSHNVHCLIRFMLEPDPECRPDIFQVSYFAFKFAKKDCPVSNINNSFLPSTLPEPMTATEAAARKSQM
KARITDTIGPTETSIAPRQRPKANSTAATSSVLTIQSSATPVKVPAPGEFSNHKPKGALRPGNGSEVLMV
QGPPQQPPQQHRVLQQLQQGDWRLQQLHLHRHPHHHHQQQQQQQQQQQQQQLQQQQQQQQQLLQNAYLQQ
YQHAMHQQHILQQQFLMHSVYQPQPPASQYPAMMQQYQQAFLQQQMLARHQQPAQQVSPEYLTSPQEFSP
ALVSYASSLPAQVGTIVDSSYGANRSVAEKEAVANFTNQKTISHPPDMSGWNPFGEDNFSKLTEEELLDR
EFDLLRSNRLGASTPSDKTVDLPPAPHSRPPEEPFASVPFISHSGSPEKKTTEHSPNQKSITANLTKNGG
SSPLCKDQRAGKKTSENPVIRGQVQKGHDDSESDFESDPPSPKSSEEEQEDEDAQGEHGDFNDDDTEPEN
LGHRPLLMDSEDEEEDDKHSSDSECEQAKTKRGDTSSLRRDKPGVAPDTALLTPARSPADALTPSQEFDV
FGAVPFFAAPAPQSLQHRGDGKNLSQHAFPEQEDFDVFTKAPFNKKVSVQDWPAVGPDARPLPARPRSVD
IFGSTPFQPFSVSASKSESKEDVFGLVPFEEITGSQQQQKVKQRSLQKLSSRQRRTKQDVSKSNGKRHHG
TPTSAKKTLKPPYRTPERARRHKKVGRRDSQSSNEFLTISDSKENISVALTDGKDRASVLPSDESLLDPF
GAKPFHPPDLWHQPHQGLSDICVDHTTILPGRPRQNSVHGSFHSAETLRMDDFGAVPFTELVVQSVTPQQ
SQPVELDPFGAAPFPSKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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