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Report for CCDS15829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15829.1 Public Mus musculus 2 Wdr5 23 108 98 CCDS HistoryNCBI Gene:140858Re-query CCDS DB by CCDS ID:15829.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15829.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113952.9 ENSMUSP00000109585.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113952.9Link to Ensembl Protein Viewer:ENSMUSP00000109585.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113952Re-query CCDS DB by Protein ID:ENSMUSP00000109585
Original member Current member NCBI NM_080848.2 NP_543124.1 Accepted alive Link to Nucleotide Sequence:NM_080848.2Link to Protein Sequence:NP_543124.1Re-query CCDS DB by Nucleotide ID:NM_080848Re-query CCDS DB by Protein ID:NP_543124Link to BLAST:NP_543124.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543124.1 334 P61965 334 100% 0 0

Chromosomal Locations for CCDS 15829.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27518712 27518792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27519349 27519457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27519743 27519816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27520327 27520416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27520573 27520662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27520828 27520911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27525106 27525161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27528274 27528320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27531639 27531714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27532993 27533026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27533337 27533411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27533768 27533855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27534757 27534857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCCACAGAGGAGAAGAAGCCAGAGACAGAGGCTGCAAGAGCACAGCCCACTCCTTCCTCATCAGCCA
CACAGAGCAAGCCCACACCAGTTAAGCCAAACTATGCCCTGAAGTTCACCCTGGCTGGCCACACCAAAGC
TGTGTCCTCTGTGAAGTTCAGCCCCAATGGGGAATGGTTGGCAAGTTCATCTGCTGATAAACTCATTAAA
ATTTGGGGAGCATATGATGGAAAGTTTGAGAAAACTATATCTGGTCACAAACTGGGAATATCTGATGTAG
CGTGGTCATCAGATTCTAACCTCCTTGTGTCTGCCTCTGATGATAAAACTTTGAAGATTTGGGACGTGAG
TTCCGGGAAGTGTCTGAAGACCCTGAAGGGCCACAGTAACTACGTCTTCTGCTGCAACTTCAACCCCCAG
TCCAACCTCATCGTCTCAGGGTCTTTTGATGAAAGTGTGAGGATATGGGACGTGAAGACAGGGAAGTGCC
TCAAGACTTTGCCTGCCCATTCGGACCCAGTCTCAGCCGTTCATTTCAACCGTGATGGATCATTGATTGT
TTCCAGTAGCTATGATGGCCTCTGCCGAATCTGGGACACCGCCTCTGGCCAGTGTCTGAAGACACTCATT
GATGATGACAATCCTCCAGTGTCCTTCGTGAAGTTCTCTCCAAATGGCAAATACATCCTGGCTGCAACTT
TGGACAACACACTGAAGCTCTGGGACTACAGCAAGGGGAAGTGCCTGAAGACATACACTGGCCACAAGAA
TGAGAAGTACTGCATATTTGCCAACTTCTCCGTGACAGGCGGGAAGTGGATTGTGTCTGGTTCTGAAGAT
AACCTGGTGTATATCTGGAATCTGCAGACCAAGGAGATTGTGCAGAAGTTGCAGGGTCACACAGATGTTG
TGATTTCCACGGCTTGTCACCCGACAGAGAACATCATTGCCTCAGCAGCGTTAGAGAACGACAAAACAAT
CAAACTGTGGAAGAGTGACTGCTAA

Translation (334 aa):
MATEEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIK
IWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ
SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI
DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED
NLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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