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Report for CCDS48501.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48501.1 Public Mus musculus 10 Plagl1 23 108 98 CCDS HistoryNCBI Gene:22634Re-query CCDS DB by CCDS ID:48501.1Re-query CCDS DB by GeneID:22634See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48501.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121646.7 ENSMUSP00000112847.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121646.7Link to Ensembl Protein Viewer:ENSMUSP00000112847.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121646Re-query CCDS DB by Protein ID:ENSMUSP00000112847
Original member Current member NCBI NM_009538.3 NP_033564.2 Accepted alive Link to Nucleotide Sequence:NM_009538.3Link to Protein Sequence:NP_033564.2Re-query CCDS DB by Nucleotide ID:NM_009538Re-query CCDS DB by Protein ID:NP_033564Link to BLAST:NP_033564.2

Chromosomal Locations for CCDS 48501.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13125017 13125168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13127142 13129104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGCTCCATTCCGCTGTCAAAAATGTGGCAAGTCCTTCGTCACCCTGGAGAAGTTCACCATTCACAATT
ATTCCCACTCCAGGGAGCGCCCATTCAAGTGCTCGAAGGCTGAGTGTGGCAAAGCCTTCGTCTCCAAGTA
TAAGCTGATGAGACACATGGCCACACACTCGCCACAGAAGATTCACCAGTGTACTCACTGTGAGAAGACA
TTCAACCGGAAGGACCACCTGAAGAACCACCTCCAGACCCACGATCCCAACAAGATCTCCTACGCGTGTG
ACGATTGCGGCAAGAAGTACCACACCATGCTGGGCTACAAGAGGCACCTGGCCCTGCACTCGGCGAGCAA
TGGCGATCTCACCTGTGGGGTGTGCACCCTGGAGCTGGGGAGCACCGAGGTCCTGCTGGACCACCTCAAG
TCTCACGCGGAAGAAAAGGCCAACCAGGCACCCAGGGAGAAGAAATACCAGTGCGACCACTGTGATAGAT
GCTTCTACACCCGGAAAGATGTGCGTCGCCACCTGGTGGTCCACACAGGATGCAAGGACTTCCTGTGTCA
GTTCTGTGCCCAGAGATTTGGGCGCAAAGACCACCTCACTCGTCACACCAAGAAGACCCACTCCCAGGAG
CTGATGCAAGAGAATATGCAGGCAGGAGATTACCAGAGCAATTTCCAACTCATTGCGCCTTCAACTTCGT
TCCAGATAAAGGTTGATCCCATGCCTCCTTTCCAGCTAGGAGCGGCTCCCGAGAACGGGCTTGATGGTGG
CTTGCCACCCGAGGTTCATGGTCTAGTGCTTGCTGCCCCAGAAGAAGCTCCCCAACCCATGCCGCCCTTG
GAGCCTTTGGAGCCTTTGGAGCCTTTGGAGCCTTTGGAGCCGATGCAGTCTTTGGAGCCTTTGCAGCCTT
TGGAGCCGATGCAGCCTTTGGAGCCAATGCAGCCTTTGGAGCCGATGCAGCCTTTAGAGCCTTTGGAGCC
TCTGGAGCCGATGCAGCCTTTGGAGCCGATGCAGCCTTTGGAGCCTATGCAGCCAATGCTGCCAATGCAG
CCAATGCAGCCAATGCAGCCAATGCAGCCAATGCTGCCAATGCAGCCAATGCTGCCAATGCAGCCAATGC
AGCCAATGCAGCCAATGCTGCCAATGCCAGAGCCGTCTTTCACTCTGCACCCTGGCGTAGTTCCCACCTC
TCCTCCCCCAATTATTCTTCAGGAGCATAAGTATAATCCTGTTCCTACCTCATATGCCCCATTTGTAGGC
ATGCCCGTCAAAGCAGATGGCAAGGCCTTTTGCAACGTGGGTTTCTTTGAGGAATTTCCTCTGCAAGAGC
CTCAGGCGCCTCTCAAGTTCAACCCATGTTTTGAGATGCCTATGGAGGGGTTTGGGAAAGTCACCCTGTC
CAAAGAGCTGCTGGTAGATGCTGTGAATATAGCCATTCCTGCCTCTCTGGAGATTTCCTCCCTATTGGGG
TTTTGGCAGCTCCCCCCTCCTACTCCCCAGAATGGCTTTGTGAATAGCACCATCCCTGTGGGGCCTGGGG
AGCCACTGCCCCATAGGATAACCTGTCTGGCGCAGCAGCAGCCACCGCCACTGCCGCCGCCACCACCGCT
GCCACTGCCACAGCCACTGCCAGTGCCACAGCCACTACCACAGCCACAGATGCAGCCACAGTTTCAGTTG
CAGATCCAGCCCCAGATGCAGCCCCAGATGCAGCTGCAGCCACTGCAGCTGCAGCTACCACAGCTGCTGC
CGCAACTGCAACCTCAGCAGCAGCCTGATCCTGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGA
GCCAGAGCCGGAACCGGAACCGGAGCCAGAGCCAGAGCCAGAACCAGAGCCAGAGGAAGAACAGGAAGAG
GCAGAAGAAGAGGCAGAGGAAGGAGCAGAGGAAGGAGCAGAACCAGAGGCACAGGCAGAAGAAGAGGAAG
AGGAAGAGGAAGCGGAAGAGCCACAGCCAGAAGAAGCCCAAATAGCAGTGAGTGCTGTGAATCTGGGCCA
GCCCCCCCTACCCCCAACTCCCCATATTTTCACAGCTGGCTCCAACACTGCTATCCTGCCCCATTTCCAT
CACGCATTTAGATAA

Translation (704 aa):
MAPFRCQKCGKSFVTLEKFTIHNYSHSRERPFKCSKAECGKAFVSKYKLMRHMATHSPQKIHQCTHCEKT
FNRKDHLKNHLQTHDPNKISYACDDCGKKYHTMLGYKRHLALHSASNGDLTCGVCTLELGSTEVLLDHLK
SHAEEKANQAPREKKYQCDHCDRCFYTRKDVRRHLVVHTGCKDFLCQFCAQRFGRKDHLTRHTKKTHSQE
LMQENMQAGDYQSNFQLIAPSTSFQIKVDPMPPFQLGAAPENGLDGGLPPEVHGLVLAAPEEAPQPMPPL
EPLEPLEPLEPLEPMQSLEPLQPLEPMQPLEPMQPLEPMQPLEPLEPLEPMQPLEPMQPLEPMQPMLPMQ
PMQPMQPMQPMLPMQPMLPMQPMQPMQPMLPMPEPSFTLHPGVVPTSPPPIILQEHKYNPVPTSYAPFVG
MPVKADGKAFCNVGFFEEFPLQEPQAPLKFNPCFEMPMEGFGKVTLSKELLVDAVNIAIPASLEISSLLG
FWQLPPPTPQNGFVNSTIPVGPGEPLPHRITCLAQQQPPPLPPPPPLPLPQPLPVPQPLPQPQMQPQFQL
QIQPQMQPQMQLQPLQLQLPQLLPQLQPQQQPDPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEEEQEE
AEEEAEEGAEEGAEPEAQAEEEEEEEEAEEPQPEEAQIAVSAVNLGQPPLPPTPHIFTAGSNTAILPHFH
HAFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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