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Report for CCDS29489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29489.1 Public Mus musculus 19 Fau 23 108 98 CCDS HistoryNCBI Gene:14109Re-query CCDS DB by CCDS ID:29489.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043074.13 ENSMUSP00000042835.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043074.13Link to Ensembl Protein Viewer:ENSMUSP00000042835.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043074Re-query CCDS DB by Protein ID:ENSMUSP00000042835
Original member Current member EBI ENSMUST00000179142.1 ENSMUSP00000136358.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179142.1Link to Ensembl Protein Viewer:ENSMUSP00000136358.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179142Re-query CCDS DB by Protein ID:ENSMUSP00000136358
Original member Current member EBI ENSMUST00000178310.8 ENSMUSP00000136803.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178310.8Link to Ensembl Protein Viewer:ENSMUSP00000136803.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178310Re-query CCDS DB by Protein ID:ENSMUSP00000136803
Original member Current member EBI ENSMUST00000236217.1 ENSMUSP00000157416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236217.1Link to Ensembl Protein Viewer:ENSMUSP00000157416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236217Re-query CCDS DB by Protein ID:ENSMUSP00000157416
Original member Current member EBI ENSMUST00000237840.1 ENSMUSP00000157878.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237840.1Link to Ensembl Protein Viewer:ENSMUSP00000157878.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237840Re-query CCDS DB by Protein ID:ENSMUSP00000157878
Original member Current member NCBI NM_001160239.3 NP_001153711.1 Accepted alive Link to Nucleotide Sequence:NM_001160239.3Link to Protein Sequence:NP_001153711.1Re-query CCDS DB by Nucleotide ID:NM_001160239Re-query CCDS DB by Protein ID:NP_001153711Link to BLAST:NP_001153711.1
Original member Current member NCBI NM_001190436.2 NP_001177365.1 Accepted alive Link to Nucleotide Sequence:NM_001190436.2Link to Protein Sequence:NP_001177365.1Re-query CCDS DB by Nucleotide ID:NM_001190436Re-query CCDS DB by Protein ID:NP_001177365Link to BLAST:NP_001177365.1
Original member Current member NCBI NM_007990.4 NP_032016.1 Accepted alive Link to Nucleotide Sequence:NM_007990.4Link to Protein Sequence:NP_032016.1Re-query CCDS DB by Nucleotide ID:NM_007990Re-query CCDS DB by Protein ID:NP_032016Link to BLAST:NP_032016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153711.1 133 P62862 133 100% 0 0
NP_001177365.1 133 P62862 133 100% 0 0
NP_032016.1 133 P62862 133 100% 0 0

Chromosomal Locations for CCDS 29489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6058251 6058325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6058428 6058572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6059144 6059199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6059349 6059474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (402 nt):
ATGCAGCTCTTTGTCCGCGCCCAGGAACTACACACCCTCGAGGTGACCGGCCAGGAGACGGTCGCCCAGA
TCAAAGATCATGTGGCCTCCCTGGAAGGCATTGCCCCCGAAGATCAAGTCGTGCTTCTGGCAGGCTCGCC
GCTGGAGGATGAGGCCACCCTAGGCCAGTGTGGCGTAGAGGCCCTGACCACTCTGGAAGTAGCAGGCCGC
ATGCTGGGAGGTAAAGTTCACGGTTCCCTGGCTCGGGCTGGAAAAGTGAGAGGTCAGACTCCCAAGGTGG
CCAAACAGGAAAAGAAGAAGAAGAAGACAGGCCGGGCCAAGAGGCGAATGCAGTACAACCGGCGCTTTGT
CAATGTTGTGCCCACCTTTGGGAAGAAGAAGGGCCCCAATGCCAATTCCTAA

Translation (133 aa):
MQLFVRAQELHTLEVTGQETVAQIKDHVASLEGIAPEDQVVLLAGSPLEDEATLGQCGVEALTTLEVAGR
MLGGKVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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