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Report for CCDS8420.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8420.1 Public Homo sapiens 11 C1QTNF5 24 110 108 CCDS HistoryNCBI Gene:114902Re-query CCDS DB by CCDS ID:8420.1Re-query CCDS DB by GeneID:114902See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8420.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528368.3 ENSP00000431140.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000528368.3Link to Ensembl Protein Viewer:ENSP00000431140.1Re-query CCDS DB by Nucleotide ID:ENST00000528368Re-query CCDS DB by Protein ID:ENSP00000431140
Original member Current member EBI ENST00000530681.2 ENSP00000456533.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530681.2Link to Ensembl Protein Viewer:ENSP00000456533.2Re-query CCDS DB by Nucleotide ID:ENST00000530681Re-query CCDS DB by Protein ID:ENSP00000456533
Original member Current member NCBI NM_001278431.2 NP_001265360.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278431.2Link to Protein Sequence:NP_001265360.1Re-query CCDS DB by Nucleotide ID:NM_001278431Re-query CCDS DB by Protein ID:NP_001265360Link to BLAST:NP_001265360.1
Original member Current member NCBI NM_015645.5 NP_056460.1 Accepted alive Link to Nucleotide Sequence:NM_015645.5Link to Protein Sequence:NP_056460.1Re-query CCDS DB by Nucleotide ID:NM_015645Re-query CCDS DB by Protein ID:NP_056460Link to BLAST:NP_056460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265360.1 243 Q9BXJ0 243 100% 0 0
NP_056460.1 243 Q9BXJ0 243 100% 0 0

Chromosomal Locations for CCDS 8420.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119339331 119339848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119340184 119340397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGAGGCCACTCCTCGTCCTGCTGCTCCTGGGCCTGGCGGCCGGCTCGCCCCCACTGGACGACAACAAGA
TCCCCAGCCTCTGCCCGGGGCACCCCGGCCTTCCAGGCACGCCGGGCCACCATGGCAGCCAGGGCTTGCC
GGGCCGCGATGGCCGCGACGGCCGCGACGGCGCGCCCGGGGCTCCGGGAGAGAAAGGCGAGGGCGGGAGG
CCGGGACTGCCGGGACCTCGAGGGGACCCCGGGCCGCGAGGAGAGGCGGGACCCGCGGGGCCCACCGGGC
CTGCCGGGGAGTGCTCGGTGCCTCCGCGATCCGCCTTCAGCGCCAAGCGCTCCGAGAGCCGGGTGCCTCC
GCCGTCTGACGCACCCTTGCCCTTCGACCGCGTGCTGGTGAACGAGCAGGGACATTACGACGCCGTCACC
GGCAAGTTCACCTGCCAGGTGCCTGGGGTCTACTACTTCGCCGTCCATGCCACCGTCTACCGGGCCAGCC
TGCAGTTTGATCTGGTGAAGAATGGCGAATCCATTGCCTCTTTCTTCCAGTTTTTCGGGGGGTGGCCCAA
GCCAGCCTCGCTCTCGGGGGGGGCCATGGTGAGGCTGGAGCCTGAGGACCAAGTGTGGGTGCAGGTGGGT
GTGGGTGACTACATTGGCATCTATGCCAGCATCAAGACAGACAGCACCTTCTCCGGATTTCTGGTGTACT
CCGACTGGCACAGCTCCCCAGTCTTTGCTTAG

Translation (243 aa):
MRPLLVLLLLGLAAGSPPLDDNKIPSLCPGHPGLPGTPGHHGSQGLPGRDGRDGRDGAPGAPGEKGEGGR
PGLPGPRGDPGPRGEAGPAGPTGPAGECSVPPRSAFSAKRSESRVPPPSDAPLPFDRVLVNEQGHYDAVT
GKFTCQVPGVYYFAVHATVYRASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQVG
VGDYIGIYASIKTDSTFSGFLVYSDWHSSPVFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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