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Report for CCDS11438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11438.1 Public Homo sapiens 17 VPS25 24 110 108 CCDS HistoryNCBI Gene:84313Re-query CCDS DB by CCDS ID:11438.1Re-query CCDS DB by GeneID:84313See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253794.7 ENSP00000253794.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253794.7Link to Ensembl Protein Viewer:ENSP00000253794.1Re-query CCDS DB by Nucleotide ID:ENST00000253794Re-query CCDS DB by Protein ID:ENSP00000253794
Original member Current member NCBI NM_032353.4 NP_115729.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032353.4Link to Protein Sequence:NP_115729.1Re-query CCDS DB by Nucleotide ID:NM_032353Re-query CCDS DB by Protein ID:NP_115729Link to BLAST:NP_115729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115729.1 176 Q9BRG1 176 100% 0 0

Chromosomal Locations for CCDS 11438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42773476 42773528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42773733 42773878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42774646 42774699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42775381 42775469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42776245 42776320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42778957 42779069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGCGATGAGTTTCGAGTGGCCGTGGCAGTATCGCTTCCCACCCTTCTTTACGTTACAACCGAATGTGG
ACACTCGGCAGAAGCAGCTGGCCGCCTGGTGCTCGCTGGTCCTGTCCTTCTGCCGCCTGCACAAACAGTC
CAGCATGACGGTGATGGAAGCTCAGGAGAGCCCGCTCTTCAACAACGTCAAGCTACAGCGAAAGCTTCCT
GTGGAGTCGATCCAGATTGTATTAGAGGAACTGAGGAAGAAAGGGAACCTCGAGTGGTTGGATAAGAGCA
AGTCCAGCTTCCTGATCATGTGGCGGAGGCCAGAAGAATGGGGGAAACTCATCTATCAGTGGGTTTCCAG
GAGTGGCCAGAACAACTCCGTCTTTACCCTGTATGAACTGACTAATGGGGAAGACACAGAGGATGAGGAG
TTCCACGGGCTGGATGAAGCCACTCTACTGCGGGCTCTGCAGGCCCTACAGCAGGAGCACAAGGCCGAGA
TCATCACTGTCAGCGATGGCCGAGGCGTCAAGTTCTTCTAG

Translation (176 aa):
MAMSFEWPWQYRFPPFFTLQPNVDTRQKQLAAWCSLVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLP
VESIQIVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEE
FHGLDEATLLRALQALQQEHKAEIITVSDGRGVKFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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