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Report for CCDS23500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23500.1 Public Mus musculus 9 Ifrd2 23 108 98 CCDS HistoryNCBI Gene:15983Re-query CCDS DB by CCDS ID:23500.1Re-query CCDS DB by GeneID:15983See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010192.10 ENSMUSP00000010192.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010192.10Link to Ensembl Protein Viewer:ENSMUSP00000010192.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000010192Re-query CCDS DB by Protein ID:ENSMUSP00000010192
Original member Current member NCBI NM_025903.2 NP_080179.1 Accepted alive Link to Nucleotide Sequence:NM_025903.2Link to Protein Sequence:NP_080179.1Re-query CCDS DB by Nucleotide ID:NM_025903Re-query CCDS DB by Protein ID:NP_080179Link to BLAST:NP_080179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080179.1 441 Q9D8U0 441 100% 0 0

Chromosomal Locations for CCDS 23500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 107587889 107587946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107589903 107590022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107590109 107590193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107590298 107590422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107590505 107590662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107590796 107590846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107590932 107591110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107591202 107591307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107591568 107591705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107592075 107592203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107592276 107592371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 107592475 107592555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGCCTCGTGCTCGGAAGGGCAATGCGCTCCGCAAGGGCGGTCAGCGCCGTGGAGGAGGTGCCAGGAGCA
GTACCCAGGCTGACTCTGGCTCCAGTGAGGATGAAGCGGCCAGTGAGGCCCGGAGCACCACCAGTGACTG
TCCCAGCCTTCTCAGCGCCACCACAGAGGACTGCCTGGGTGGCGAAGCGGTGGACGAACAGAGCCAGCAG
GAAAACCTGGAGGAGAAGCTGAAAGGTTATGTGGACTGCCTGACTGACAAGAGTGCCAAGACCCGTCAAG
GAGCCCTGGAGAGCCTGCGCCTGGCCCTGGCCTCCCGCCTACTTCCGGACTTTCTGCTGGAGCGCAGCCT
CACTCTGGCGGATGCCCTGGAAAAGTGCCTTAAGAAAGGGAAGGGTGAAGAACAGGCTCTGGCTGCTGCT
GTGCTAGGCATTCTCTGTGTGCAGTTGGGCCCTGGACCCAAGGGCGAGGAGCTGTTCCGTAGCCTGCAGC
CCTTGCTCATCTCGGTGCTCAGTGACAGTACAGCAAGCCCCACTGCCCGGCTCCATTGTGCTTCTGCTCT
TGGCTTGGGTTGCTATGTGGCTGCCACCGACGTCCAGGACCTGGTCTCTTGCTTGGCCTGCTTGGAAGGT
GTTTTCAGCTGGTCCTGTGGCACTAGTGGCTCTGCGGCGTCTCTGGTTCCCGCCAGCCTCCATGGCCTTC
TCTGTGCTGCCCTGCAGGCCTGGGCATTGCTGCTCACCATCTGTCCTGGTACCCACATCAGCCATATCCT
TGACAGGCAGCTGCCCCGGCTGCCCCAGCTCTTGTCCAGTGAAAGTGTGAACCTGCGGATTGCTGCTGGT
GAAGCCATCGCGCTACTCTTTGAGCTTGCCCGGGACCTTGAGGAGGACTTCGTCTATGAAGACATGGAGG
CCCTCTGTGGATCTCTGCGTACCCTAGCCACCGACAGCAATAAGTACCGTGCCAAGGTTGACCGGCGGCG
CCAGCGCTCCATTTTCCGAGCTGTGCTGCACTTTGTTGAGGGTGGTGAATGTGAGGAGGAGACAGTCCGC
TTCGGACTGGAAGTGCTCTACATAGACAGCTGGGCTCGCCACCGCATCTACACAGCCTTCAAAGATGTGT
TGGGCTCTGGCATACACTATCACCTCCAGAACAATGAGCTTCTCCGTGACATCTTTGGCCTGGGCCCCGT
GCTAGTGTTGGATGCTGCTGCCCTGAAGGCCTGCAAGATTTCACGCTTTGAAAAGCACCTGTACAATGCT
GCAGCCTTCAAAGCCCGGACCAAGGCCCGTAGTCGTGCAAGGGACAAGCGGGCAGATATCTTGTGA

Translation (441 aa):
MPRARKGNALRKGGQRRGGGARSSTQADSGSSEDEAASEARSTTSDCPSLLSATTEDCLGGEAVDEQSQQ
ENLEEKLKGYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERSLTLADALEKCLKKGKGEEQALAAA
VLGILCVQLGPGPKGEELFRSLQPLLISVLSDSTASPTARLHCASALGLGCYVAATDVQDLVSCLACLEG
VFSWSCGTSGSAASLVPASLHGLLCAALQAWALLLTICPGTHISHILDRQLPRLPQLLSSESVNLRIAAG
EAIALLFELARDLEEDFVYEDMEALCGSLRTLATDSNKYRAKVDRRRQRSIFRAVLHFVEGGECEEETVR
FGLEVLYIDSWARHRIYTAFKDVLGSGIHYHLQNNELLRDIFGLGPVLVLDAAALKACKISRFEKHLYNA
AAFKARTKARSRARDKRADIL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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