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Report for CCDS16780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16780.1 Public Mus musculus 2 Lrrn4 23 108 98 CCDS HistoryNCBI Gene:320974Re-query CCDS DB by CCDS ID:16780.1Re-query CCDS DB by GeneID:320974See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049787.2 ENSMUSP00000057005.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049787.2Link to Ensembl Protein Viewer:ENSMUSP00000057005.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000049787Re-query CCDS DB by Protein ID:ENSMUSP00000057005
Original member Current member NCBI NM_177303.4 NP_796277.2 Accepted alive Link to Nucleotide Sequence:NM_177303.4Link to Protein Sequence:NP_796277.2Re-query CCDS DB by Nucleotide ID:NM_177303Re-query CCDS DB by Protein ID:NP_796277Link to BLAST:NP_796277.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796277.2 733 P59383 733 100% 0 0

Chromosomal Locations for CCDS 16780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132869700 132870903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132872027 132872158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132878013 132878217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132879235 132879895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGCGGTGGACGCTGATGCTGCAGCTGCTGCAGCTCCTGCTACAACTGCTGATGGCGCAGAGCCAGAGCC
TGGAAAGGATCTCCCAGGACCGGATCCCCCTCTTCCGACTCACTCAGCAGGGAGACTGGGACAGCCTCGA
CCGCCACCCTACCGACTCTCTCTGTGTAGGACTCCCCGCCGCGGGAGTCACCACTCTGAACTTGGCGAAC
CGCAGCCTGGAGAGCCTGCCTAGCTGCCTGCCGCGCACGCTGCGCAGCCTCGATGGCAGCCACAACCTGC
TGCGCGCCCTTAGCGAGCCTGTGCTCGGCCGCCTGCCCGAGCTGCGCGTACTCACGCTGCACCACAACCG
CATCTCCGTGCTACACTGGGGCCGTGACACGCTGGCCGAGCTGCGTGAGCTCGACCTCAGTCACAACCTG
CTGACCGAGCTGCCGCCCTGCGCGGGGCCCTCGGGGAGCAGCCTGCGCTCGCTGGCGCTGGCCGGGAACC
CACTGCGAGCGCTGCTGCCACGGACCTTTGCATGCTTCCCAGCGCTGCGGCTTCTCAACCTCTCCTGCAG
CGAGCTGGGCCACATCGCCCAGGAGGCATTCGCGGGGGTGGACGGTGGGCCCCTGGCGGCACTGGAGCTC
TTGGATCTGAGCGGCACGAGCCTAGAAAGAGTTGAGTCTGGGTGGATCAGAAACCTGCCAAAGCTCAAGT
CCCTCTTCCTGAGAAAGATGCCCAGGCTGAAGACACTGGAGGGAGACATTTTCAAGATGACTCCCAACCT
GCGGCAGCTGGATTGTGGAGACTCTCCAGCACTTACTTCTGTTCACACAGAGATCTTTCAAGACACACCC
AATCTACAAGTCCTTCAGTTTCAGAACTGCAACTTGAGTTCCTTTGGTCCTTGGAATTCCTCCCAGGTCT
TGTCCGTCAGTCTCTTTGGCAACCCTCTCATTTGCAGCTGTGAGCTGGCTTGGCTTCTCGTGGATGTCAA
CAAAACTGTCTTACACAGGGCAGCTGATACCATGTGTGAGCCTGCTTTAGGATCCACGGGCCCCTTCTCA
GGCCCTCTCTCCCTCTCCCACCTGTCTAATGTGTGCAGGTCAGACCAAAGCACCACCCTCCTGCCTTCAA
ACCCAGGCCGCTTCGATCATTCAGTTTTTGCACCACGGATACAGGGGCCTTCCATTGAACAGAGCACGGC
CTTGTCTGCTCAGCCTGGAGGAAGCCAACAAAATATCACCAAGGTCCCTTCCCTCACCATGACTTCCCCC
ACACAAGGATCATGGATGTATAAAGATGCTTCAGAGGAAACTGCCCAGTCCACTAACTCTGAGCTAGTTT
ATAGTCCTTCCAGGGCTCTGCCTGGTGCTGCCAGTTCTGGGGCAGAGCAGACTGCCACACATATCCTTGA
GCCTAATATTTCATCTGCCTCTACCCCATTAGTCAGCAAGTACCTTGAACCCTTGCCTACTTCACCAAAC
CCCAGGAGCTTACCTCAGACCAAGCAGAGGACACAAGCCACGCCCAGGGCTCTCCACACAGACCCTCCAC
AGGATGAGATTCCAGTTTTGCTGTTAGATGATGACAGCGAGGAGGAGGAGACTCGGGACCAGGTGGCGGC
ACCTCCCCAGGACGTCTCTTGTGAATACCACCCCTGCAAGCATCTGCAGACCCCGTGCGCAGAGCTGCAG
AGGCGCTTCAGATGCCGTTGCCCTGGTCTCAGTGGGGAGGATACCACTCCAGACCCTCCCACGCTGCAGG
GGGTGTCAGAGGTGACTGACACATCAGTGCTCGTCCACTGGTGTGCCCCCAACTCAGTGGTGCTCTGGTA
TCAGATCCACTATGTGGCAGAAGGACGATCTGGGAATCAATCCGTAGTGGACATCTATGCTACTGCCAGG
CAGCACCCCCTGTACAAGCTGACACCTGGCACCACCTACCATGTGTGTGTACTGGCAGCCAACAGGGCTG
GCCTGAGCCAGTCACAGACCTCAGGCTGGAGGAGGTCATGTGCCACTTTCACAACCAAGCCCAGCTCTGT
GGTCATCTTCTGGGGACTGTGTACCGCCAGTGGCCTGTTACTGGTTAGCACCCTGGTGCTGTCTGTGTGT
CTCTGGAGGCAGCGCTGGAAGCCACACAGGCAGTTCTACGACACACACCTGGTGGCCTTCAAAAACCCAG
CCAGAGCTGAGGAAGTAACTCAGTGGGAGTGA

Translation (733 aa):
MRWTLMLQLLQLLLQLLMAQSQSLERISQDRIPLFRLTQQGDWDSLDRHPTDSLCVGLPAAGVTTLNLAN
RSLESLPSCLPRTLRSLDGSHNLLRALSEPVLGRLPELRVLTLHHNRISVLHWGRDTLAELRELDLSHNL
LTELPPCAGPSGSSLRSLALAGNPLRALLPRTFACFPALRLLNLSCSELGHIAQEAFAGVDGGPLAALEL
LDLSGTSLERVESGWIRNLPKLKSLFLRKMPRLKTLEGDIFKMTPNLRQLDCGDSPALTSVHTEIFQDTP
NLQVLQFQNCNLSSFGPWNSSQVLSVSLFGNPLICSCELAWLLVDVNKTVLHRAADTMCEPALGSTGPFS
GPLSLSHLSNVCRSDQSTTLLPSNPGRFDHSVFAPRIQGPSIEQSTALSAQPGGSQQNITKVPSLTMTSP
TQGSWMYKDASEETAQSTNSELVYSPSRALPGAASSGAEQTATHILEPNISSASTPLVSKYLEPLPTSPN
PRSLPQTKQRTQATPRALHTDPPQDEIPVLLLDDDSEEEETRDQVAAPPQDVSCEYHPCKHLQTPCAELQ
RRFRCRCPGLSGEDTTPDPPTLQGVSEVTDTSVLVHWCAPNSVVLWYQIHYVAEGRSGNQSVVDIYATAR
QHPLYKLTPGTTYHVCVLAANRAGLSQSQTSGWRRSCATFTTKPSSVVIFWGLCTASGLLLVSTLVLSVC
LWRQRWKPHRQFYDTHLVAFKNPARAEEVTQWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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