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Report for CCDS16845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16845.1 Public Mus musculus 2 Cst11 23 108 98 CCDS HistoryNCBI Gene:78240Re-query CCDS DB by CCDS ID:16845.1Re-query CCDS DB by GeneID:78240See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16845.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028934.2 ENSMUSP00000028934.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028934.2Link to Ensembl Protein Viewer:ENSMUSP00000028934.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028934Re-query CCDS DB by Protein ID:ENSMUSP00000028934
Original member Current member NCBI NM_030059.2 NP_084335.1 Accepted alive Link to Nucleotide Sequence:NM_030059.2Link to Protein Sequence:NP_084335.1Re-query CCDS DB by Nucleotide ID:NM_030059Re-query CCDS DB by Protein ID:NP_084335Link to BLAST:NP_084335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084335.1 139 Q9D269 139 100% 0 0

Chromosomal Locations for CCDS 16845.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148768710 148768796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148770383 148770487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148771176 148771403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGGCGGCCGGATCTTGGAAGGCAACACGGCTCCTGTTGGCCATTCTGGTGGCCCTGGTGGCTTTCAGCT
ACCAAGTAAAGAGGAAAACATTTATACGGATTGAAGAAGTGAGTGCATTGGAGTCTTCTGTGAAGGAGAC
ATTGGAGTATGTCACAGATGAATACAACAAGAAAAGTGAAGACTTGTACAACTTCAGGATCCTTCGAATC
CTGAAGATTATGAAGCAGGTGACAGGTCACCTGGAGTATCACATCACAGTGGAAATGCAGCGGACCACCT
GCTTGAAGACAGAGACGAGCCTCTGTGATATCCAGAAAGGGGAACTTCACAAGAAAATCCAGTGCTACTT
CTCAGTGTACGCCATTCCCTGGGTTGAAGTATTCAAAATACTCAAGAAAAACTGTACCGATATCAGCTGA

Translation (139 aa):
MAAGSWKATRLLLAILVALVAFSYQVKRKTFIRIEEVSALESSVKETLEYVTDEYNKKSEDLYNFRILRI
LKIMKQVTGHLEYHITVEMQRTTCLKTETSLCDIQKGELHKKIQCYFSVYAIPWVEVFKILKKNCTDIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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