NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25476.1 Public Mus musculus 11 Tmem106a 23 108 98 CCDS HistoryNCBI Gene:217203Re-query CCDS DB by CCDS ID:25476.1Re-query CCDS DB by GeneID:217203See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039581.13 ENSMUSP00000045832.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039581.13Link to Ensembl Protein Viewer:ENSMUSP00000045832.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039581Re-query CCDS DB by Protein ID:ENSMUSP00000045832
Original member Current member EBI ENSMUST00000100403.8 ENSMUSP00000097971.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100403.8Link to Ensembl Protein Viewer:ENSMUSP00000097971.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100403Re-query CCDS DB by Protein ID:ENSMUSP00000097971
Original member Current member NCBI NM_001359325.1 NP_001346254.1 Accepted alive Link to Nucleotide Sequence:NM_001359325.1Link to Protein Sequence:NP_001346254.1Re-query CCDS DB by Nucleotide ID:NM_001359325Re-query CCDS DB by Protein ID:NP_001346254Link to BLAST:NP_001346254.1
Original member Current member NCBI NM_001359326.1 NP_001346255.1 Accepted alive Link to Nucleotide Sequence:NM_001359326.1Link to Protein Sequence:NP_001346255.1Re-query CCDS DB by Nucleotide ID:NM_001359326Re-query CCDS DB by Protein ID:NP_001346255Link to BLAST:NP_001346255.1
Original member Current member NCBI NM_001359327.1 NP_001346256.1 Accepted alive Link to Nucleotide Sequence:NM_001359327.1Link to Protein Sequence:NP_001346256.1Re-query CCDS DB by Nucleotide ID:NM_001359327Re-query CCDS DB by Protein ID:NP_001346256Link to BLAST:NP_001346256.1
Original member Current member NCBI NM_144830.3 NP_659079.1 Accepted alive Link to Nucleotide Sequence:NM_144830.3Link to Protein Sequence:NP_659079.1Re-query CCDS DB by Nucleotide ID:NM_144830Re-query CCDS DB by Protein ID:NP_659079Link to BLAST:NP_659079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346254.1 261 Q8VC04 261 100% 0 0
NP_001346255.1 261 Q8VC04 261 100% 0 0
NP_001346256.1 261 Q8VC04 261 100% 0 0
NP_659079.1 261 Q8VC04 261 100% 0 0

Chromosomal Locations for CCDS 25476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101583577 101583784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101584446 101584509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101586239 101586392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101588853 101588993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101589098 101589141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101589935 101589988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101590333 101590453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGGGTAAGGCAGTCTCCCAGCTCACCTCTCGGAAGGATGAGGACAAGCCTATCCTACCTGATAACCCAG
CCATGGCCAGCCAGGCTGCCAACTACTTCAGCACTGGTAGCAGCAAGCCAGCACACTCCTGTATGCCTTA
TGAAAAGGCTGCTAGTTCCAGCTTTGTGACTTGTCCTACCTGCCAAGGCAATGGGGAGATCCCCCAAGAG
CAAGAGAAGCAGCTGGTTGCTCTCATCCCTTATGGAGACCAAAGGCTGAAGCCCAGACGCACGAAGCTCT
TTGTGTTCCTGTCGGTGGCCATCTGCCTGCTGATTTTCTCCCTCACCATCTTTTTCCTGTATCCCCGGCC
CATTGCTGTGCGTCCTGTCGGCCTCAACTCTTCCACAGTAACCTTTGAAGACGCTCACGTACAGCTCAAC
ACGACGAATGTCCTGAACATCTTCAACAGCAACTTCTATCCCATCACAGTGACACAGCTGACGGCCGAGG
TGCTCCACCAGGCCTCTGTGGTAGGCCAGGTCACCAGCAGCCTCCGCCTGCACATCGGCCCATTGGCCAG
TGAGCAGATGCCTTACGAAGTTGCCAGCAGGATTTTGGATGAAAACACATACAAAATCTGTACATGGCCG
AAAATCAGAGTCCACCATATTCTTTTGAATATCCAGGGTTCTCTGACCTGCTCCTTCCTAAGCCATCCGC
AACAGCTGCCCTTCGAGAGCTTTGAATATGTAGACTGCAGAGAAAACATGTCCCTGCCCCACCTGGAGCT
GCCCCGCCCAGCCTGA

Translation (261 aa):
MGKAVSQLTSRKDEDKPILPDNPAMASQAANYFSTGSSKPAHSCMPYEKAASSSFVTCPTCQGNGEIPQE
QEKQLVALIPYGDQRLKPRRTKLFVFLSVAICLLIFSLTIFFLYPRPIAVRPVGLNSSTVTFEDAHVQLN
TTNVLNIFNSNFYPITVTQLTAEVLHQASVVGQVTSSLRLHIGPLASEQMPYEVASRILDENTYKICTWP
KIRVHHILLNIQGSLTCSFLSHPQQLPFESFEYVDCRENMSLPHLELPRPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH