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Report for CCDS17802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17802.1 Public Mus musculus 3 Cnn3 23 108 98 CCDS HistoryNCBI Gene:71994Re-query CCDS DB by CCDS ID:17802.1Re-query CCDS DB by GeneID:71994See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029773.12 ENSMUSP00000029773.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029773.12Link to Ensembl Protein Viewer:ENSMUSP00000029773.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029773Re-query CCDS DB by Protein ID:ENSMUSP00000029773
Original member Current member NCBI NM_028044.2 NP_082320.1 Accepted alive Link to Nucleotide Sequence:NM_028044.2Link to Protein Sequence:NP_082320.1Re-query CCDS DB by Nucleotide ID:NM_028044Re-query CCDS DB by Protein ID:NP_082320Link to BLAST:NP_082320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082320.1 330 Q9DAW9 330 100% 0 0

Chromosomal Locations for CCDS 17802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121426772 121426828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121449949 121450070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121450292 121450358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121451383 121451520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121451883 121451999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121454947 121455093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121457082 121457426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGACCCACTTCAACAAGGGCCCTTCCTACGGGCTCTCCGCCGAAGTTAAGAACAAGATTGCATCCAAGT
ATGACCAGCAGGCCGAGGAAGATCTGCGCAACTGGATAGAAGAGGTGACAGGCCTAGGCATTGGCACCAA
CTTCCAGCTGGGGCTGAAGGACGGCATCATATTGTGCGAACTCATAAACAAGCTACAGCCAGGCTCTGTG
AAGAAAGTCAACGAATCCTCACTAAATTGGCCCCAGTTGGAGAATATCGGCAACTTCATTAAAGCTATCC
AGGCTTACGGTATGAAGCCCCATGATATATTTGAAGCAAACGACCTCTTTGAGAATGGCAACATGACCCA
GGTTCAGACGACGCTGGTGGCTCTAGCAGGTCTGGCGAAAACAAAAGGATTCCATACAACCATTGACATT
GGCGTTAAGTATGCAGAAAAACAAACAAGACGTTTTGATGAAGGCAAATTAAAGGCTGGCCAGAGTGTAA
TTGGTTTACAGATGGGTACCAACAAATGTGCCAGCCAGGCGGGCATGACAGCCTATGGGACTCGGAGGCA
TCTTTATGATCCCAAGATGCAGACGGACAAACCCTTTGACCAGACCACGATTAGCCTGCAGATGGGCACC
AACAAAGGGGCCAGCCAGGCTGGGATGTTAGCACCGGGCACCAGAAGAGACATCTATGACCAGAAGCTGA
CATTACAGCCAGTGGACAACTCGACCATTTCTCTACAGATGGGCACCAACAAAGTTGCTTCCCAGAAAGG
AATGAGCGTGTATGGGCTTGGGCGGCAAGTATATGACCCCAAGTACTGTGCCGCACCCACAGAACCTGTC
ATTCACAACGGAAGCCAGGGCACGGGCACCAATGGGTCGGAAATCAGTGATAGCGATTATCAGGCAGAAT
ACCCCGATGAATATCATGGCGAGTACCCAGACGACTACCCTCGGGAGTACCAGTATGGCGACGACCAGGG
CATTGATTATTAG

Translation (330 aa):
MTHFNKGPSYGLSAEVKNKIASKYDQQAEEDLRNWIEEVTGLGIGTNFQLGLKDGIILCELINKLQPGSV
KKVNESSLNWPQLENIGNFIKAIQAYGMKPHDIFEANDLFENGNMTQVQTTLVALAGLAKTKGFHTTIDI
GVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPFDQTTISLQMGT
NKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYDPKYCAAPTEPV
IHNGSQGTGTNGSEISDSDYQAEYPDEYHGEYPDDYPREYQYGDDQGIDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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