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Report for CCDS17132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17132.1 Public Mus musculus 2 Rtf2 23 108 98 CCDS HistoryNCBI Gene:66404Re-query CCDS DB by CCDS ID:17132.1Re-query CCDS DB by GeneID:66404See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029005.3 ENSMUSP00000029005.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029005.3Link to Ensembl Protein Viewer:ENSMUSP00000029005.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029005Re-query CCDS DB by Protein ID:ENSMUSP00000029005
Original member Current member NCBI NM_025542.2 NP_079818.1 Accepted alive Link to Nucleotide Sequence:NM_025542.2Link to Protein Sequence:NP_079818.1Re-query CCDS DB by Nucleotide ID:NM_025542Re-query CCDS DB by Protein ID:NP_079818Link to BLAST:NP_079818.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079818.1 307 Q99K95 307 100% 0 0

Chromosomal Locations for CCDS 17132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 172440671 172440739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172444647 172444741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172445327 172445420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172446622 172446761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172447035 172447113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172463177 172463290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172466274 172466331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172466429 172466524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 172468596 172468774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGGTTGCGACGGAGGCACCATCCCCAAGAGGCACGAGCTGGTGAAGGGGCCGAAGAAGGTCGAGAAGG
TTGACAAAGACGCTGAACTGGTAGCCCAATGGAACTACTGTACCCTAAGTCAGGAAATCCTGAGGCGCCC
AATAGTTGCCTGTGAGCTTGGCAGACTGTATAACAAAGACGCGGTCATCGAGTTTCTGTTGGACAAATCT
GCTGAGAAGGCCCTGGGGAAGGCGGCATCGCACATCAGAAGCATCAAGAATGTGACAGAGCTCAGGCTTT
CTGACAACCCCGCCTGGGAAGGAGATAAAGGGAACACCAAGGGCGACAAGCATGATGACCTCCAGAGAGC
GCGGTTCATCTGCCCTGTGGTGGGCCTGGAGATGAATGGCCGGCACAGGTTTTGCTTCCTCCGATGCTGC
GGTTGTGTGTTTTCTGAACGCGCCTTGAAGGAGATAAAAGCTGAAGTGTGTCACACGTGTGGGGCTGCCT
TCCAGGAGGAGGACATCATTGTGCTCAATGGCACCAAGGAGGATGTGGAGATGCTGAAGAAGAGGATGGA
GGAGAGGAGGCTGAGGGCCAAGCTGGAAAAGAAAACAAAGAAACCGAAGACAGCGACCGAGTGTGCGTCA
AAGCCGGGTACCACACAAGATTCCGCAGGGCCATCAAAAGTGAAGTCTGGCAAGCCTGAGGAGGCGGACC
CTGATCCTAGAGAGAAGAAAAGCACCCCGGCTCCCAGGGGCGCAGCAACTAATGGGAGTGCGTCTGGGAA
AGTTGGCAAGCCCCCATGTGGGGCCCTGAAGAGGTCCATTGCAGACAGCGAGGAGTCTGAAACCTACAAG
TCTATCTTCACCAGCCACAGCTCTGCCAAGCGCTCCAAGGAGGAGTCTGCGCACTGGGTCACCCACACAT
CCTACTGCTTCTGA

Translation (307 aa):
MGCDGGTIPKRHELVKGPKKVEKVDKDAELVAQWNYCTLSQEILRRPIVACELGRLYNKDAVIEFLLDKS
AEKALGKAASHIRSIKNVTELRLSDNPAWEGDKGNTKGDKHDDLQRARFICPVVGLEMNGRHRFCFLRCC
GCVFSERALKEIKAEVCHTCGAAFQEEDIIVLNGTKEDVEMLKKRMEERRLRAKLEKKTKKPKTATECAS
KPGTTQDSAGPSKVKSGKPEEADPDPREKKSTPAPRGAATNGSASGKVGKPPCGALKRSIADSEESETYK
SIFTSHSSAKRSKEESAHWVTHTSYCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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