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Report for CCDS29931.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29931.1 Public Mus musculus 19 Pnliprp1 23 108 98 CCDS HistoryNCBI Gene:18946Re-query CCDS DB by CCDS ID:29931.1Re-query CCDS DB by GeneID:18946See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29931.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048644.5 ENSMUSP00000045465.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048644.5Link to Ensembl Protein Viewer:ENSMUSP00000045465.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000048644Re-query CCDS DB by Protein ID:ENSMUSP00000045465
Original member Current member NCBI NM_018874.2 NP_061362.1 Accepted alive Link to Nucleotide Sequence:NM_018874.2Link to Protein Sequence:NP_061362.1Re-query CCDS DB by Nucleotide ID:NM_018874Re-query CCDS DB by Protein ID:NP_061362Link to BLAST:NP_061362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061362.1 473 Q5BKQ4 473 100% 0 0

Chromosomal Locations for CCDS 29931.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58729125 58729173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58729977 58730131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58730475 58730600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58732024 58732158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58733356 58733464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58734643 58734762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58734873 58734992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58736991 58737109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58738146 58738275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58740446 58740554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58741089 58741256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58744047 58744128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGCTGATTCTCTGGACAATCCCTCTTTTCCTACTGGGAGCAGCTCAGGGGAAAGAGGTTTGCTATGACA
ACCTTGGATGCTTTTCTGATGCTGAGCCCTGGGCAGGGACAGCTATCAGGCCCCTAAAACTTCTCCCTTG
GAGCCCTGAGAAGATCAACACTCGCTTCCTGCTCTACACCAATGAGAACCCAACTGCTTTCCAGACTCTT
CAGCTTTCTGACCCATCGACCATTGAGGCCTCCAATTTTCAAGTTGCCAGGAAGACTCGGTTCATCATCC
ATGGCTTCATAGACAAAGGAGAGGAGAACTGGGTGGTTGACATGTGCAAGAACATGTTCCAAGTGGAGGA
GGTGAACTGCATCTGCGTGGACTGGAAGAGAGGCTCTCAGACTACCTACACGCAGGCTGCCAACAATGTG
CGAGTAGTGGGTGCCCAGGTGGCTCAGATGATTGACATCCTTGTGAGAAACTTCAACTACTCTGCTTCCA
AAGTCCACCTCATTGGCCACAGCCTAGGAGCCCACGTGGCAGGGGAAGCAGGAAGTCGGACTCCAGGTCT
TGGCAGGATTACAGGACTGGATCCTGTAGAAGCAAATTTTGAGGGAACCCCTGAAGAGGTCCGGCTCGAC
CCCTCGGATGCTGACTTTGTTGATGTGATTCACACAGATGCAGCTCCCTTGATCCCATTCTTGGGCTTTG
GAACAAACCAAATGGTGGGGCACTTTGACTTCTTCCCCAACGGAGGACAGTACATGCCCGGGTGCAAGAA
GAACGCTCTGTCACAGATTGTGGACATCGATGGCATCTGGTCAGGAACCCGGGACTTTGTGGCTTGTAAC
CACCTGAGAAGCTACAAGTACTACTTAGAGAGCATCCTTAACCCAGATGGGTTTGCTGCATACCCCTGCG
CTTCCTACAGGGACTTTGAGTCTAACAAATGCTTCCCCTGCCCAGATCAAGGCTGCCCACAGATGGGTCA
CTATGCTGATAAGTTTGCCAACAATACAAGTGTGGAGCCACAGAAGTTCTTCCTGAACACAGGAGAAGCC
AAGAACTTTGCACGCTGGAGGTACCGTGTTTCCTTGACATTCTCTGGAAGGACGGTCACAGGCCAAGTCA
AAGTGTCTCTGTTTGGAAGTAACGGCAATACTCGCCAGTGTGATATCTTCAGGGGAATTATCAAGCCCGG
TGCTACGCATTCCAATGAGTTTGATGCCAAGCTTGATGTGGGAACAATTGAGAAAGTCAAGTTTCTTTGG
AATAACCACGTGGTAAACCCAAGTTTCCCCAAAGTGGGCGCAGCCAAGATCACTGTGCAAAAGGGGGAGG
AGCGGACAGAGCACAACTTCTGTAGTGAAGAGACCGTGAGAGAAGACATCCTGCTCACTCTCTTGCCTTG
TAAAACCTCAGACACAATGTGA

Translation (473 aa):
MLILWTIPLFLLGAAQGKEVCYDNLGCFSDAEPWAGTAIRPLKLLPWSPEKINTRFLLYTNENPTAFQTL
QLSDPSTIEASNFQVARKTRFIIHGFIDKGEENWVVDMCKNMFQVEEVNCICVDWKRGSQTTYTQAANNV
RVVGAQVAQMIDILVRNFNYSASKVHLIGHSLGAHVAGEAGSRTPGLGRITGLDPVEANFEGTPEEVRLD
PSDADFVDVIHTDAAPLIPFLGFGTNQMVGHFDFFPNGGQYMPGCKKNALSQIVDIDGIWSGTRDFVACN
HLRSYKYYLESILNPDGFAAYPCASYRDFESNKCFPCPDQGCPQMGHYADKFANNTSVEPQKFFLNTGEA
KNFARWRYRVSLTFSGRTVTGQVKVSLFGSNGNTRQCDIFRGIIKPGATHSNEFDAKLDVGTIEKVKFLW
NNHVVNPSFPKVGAAKITVQKGEERTEHNFCSEETVREDILLTLLPCKTSDTM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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