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Report for CCDS23229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23229.1 Public Mus musculus 9 Cyp1a2 23 108 98 CCDS HistoryNCBI Gene:13077Re-query CCDS DB by CCDS ID:23229.1Re-query CCDS DB by GeneID:13077See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034860.4 ENSMUSP00000034860.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034860.4Link to Ensembl Protein Viewer:ENSMUSP00000034860.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034860Re-query CCDS DB by Protein ID:ENSMUSP00000034860
Original member Current member NCBI NM_009993.3 NP_034123.1 Accepted alive Link to Nucleotide Sequence:NM_009993.3Link to Protein Sequence:NP_034123.1Re-query CCDS DB by Nucleotide ID:NM_009993Re-query CCDS DB by Protein ID:NP_034123Link to BLAST:NP_034123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034123.1 513 P00186 513 100% 0 0

Chromosomal Locations for CCDS 23229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 57677228 57677522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57678987 57679073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57679847 57679970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57680250 57680339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57680994 57681111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 57681702 57682529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGCGTTCTCCCAGTACATCTCCTTAGCCCCAGAGCTGCTACTGGCCACTGCCATCTTCTGTTTAGTGT
TCTGGATGGTCAGAGCCTCAAGGACCCAGGTTCCCAAAGGCCTGAAGAATCCACCCGGACCCTGGGGCTT
GCCCTTCATTGGGCACATGCTGACTGTGGGGAAGAACCCACACCTGTCACTGACACGGCTGAGTCAGCAG
TATGGGGACGTGCTGCAGATCCGCATCGGCTCCACTCCTGTGGTGGTGCTGAGCGGCCTGAACACCATCA
AGCAGGCCCTGGTGAGGCAGGGAGATGACTTCAAGGGCCGACCAGACCTCTACAGCTTCACACTTATCAC
TAACGGCAAGAGCATGACTTTCAACCCAGACTCTGGACCCGTGTGGGCTGCCCGCCGGCGCCTGGCCCAG
GATGCCCTGAAGAGCTTCTCCATAGCCTCGGACCCGACGTCAGCATCCTCTTGCTATTTGGAGGAGCACG
TGAGCAAGGAGGCTAACCATCTCGTCAGCAAGCTTCAGAAGGCGATGGCAGAGGTTGGCCACTTCGAACC
AGTCAGCCAGGTGGTGGAATCGGTGGCTAACGTCATTGGTGCCATGTGCTTTGGGAAGAACTTCCCCCGG
AAGAGCGAGGAGATGCTGAACATCGTGAATAACAGCAAGGACTTTGTGGAGAATGTCACCTCAGGGAATG
CAGTGGACTTCTTCCCGGTCCTGCGCTACCTGCCCAACCCGGCCCTCAAGAGGTTTAAGACCTTCAATGA
TAACTTCGTGCTGTTTCTGCAGAAAACTGTCCAGGAGCACTACCAAGACTTCAACAAGAACAGTATCCAA
GACATCACAAGTGCCCTGTTCAAGCACAGCGAGAACTACAAAGACAATGGCGGTCTCATCCCCGAGGAGA
AGATTGTCAACATTGTCAATGACATCTTTGGAGCTGGCTTTGACACAGTCACCACAGCCATCACCTGGAG
CATTTTGCTACTTGTGACATGGCCTAACGTGCAGAGGAAGATCCATGAGGAGCTGGACACGGTGGTTGGC
AGGGATCGGCAACCACGGCTTTCTGACCGTCCCCAGCTGCCATATCTAGAGGCCTTCATCCTGGAGATCT
ACCGATACACATCCTTTGTCCCCTTCACCATCCCCCACAGCACAACGAGGGACACCTCACTGAATGGCTT
CCACATTCCCAAGGAGCGCTGTATCTACATAAACCAGTGGCAGGTCAACCATGATGAGAAGCAGTGGAAA
GACCCCTTTGTGTTCCGCCCAGAGCGGTTTCTTACCAATAACAACTCGGCCATCGACAAGACCCAGAGCG
AGAAGGTGATGCTCTTCGGCTTGGGAAAGCGCCGGTGCATTGGGGAGATCCCGGCCAAGTGGGAAGTCTT
CCTCTTCTTAGCCATCCTGCTGCAGCATCTGGAGTTTAGTGTGCCACCGGGTGTGAAGGTGGACCTGACA
CCCAACTATGGGTTGACCATGAAGCCCGGGACCTGTGAACACGTCCAGGCATGGCCACGCTTTTCCAAGT
GA

Translation (513 aa):
MAFSQYISLAPELLLATAIFCLVFWMVRASRTQVPKGLKNPPGPWGLPFIGHMLTVGKNPHLSLTRLSQQ
YGDVLQIRIGSTPVVVLSGLNTIKQALVRQGDDFKGRPDLYSFTLITNGKSMTFNPDSGPVWAARRRLAQ
DALKSFSIASDPTSASSCYLEEHVSKEANHLVSKLQKAMAEVGHFEPVSQVVESVANVIGAMCFGKNFPR
KSEEMLNIVNNSKDFVENVTSGNAVDFFPVLRYLPNPALKRFKTFNDNFVLFLQKTVQEHYQDFNKNSIQ
DITSALFKHSENYKDNGGLIPEEKIVNIVNDIFGAGFDTVTTAITWSILLLVTWPNVQRKIHEELDTVVG
RDRQPRLSDRPQLPYLEAFILEIYRYTSFVPFTIPHSTTRDTSLNGFHIPKERCIYINQWQVNHDEKQWK
DPFVFRPERFLTNNNSAIDKTQSEKVMLFGLGKRRCIGEIPAKWEVFLFLAILLQHLEFSVPPGVKVDLT
PNYGLTMKPGTCEHVQAWPRFSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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