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Report for CCDS25584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25584.1 Public Mus musculus 11 Fam20a 23 108 98 CCDS HistoryNCBI Gene:208659Re-query CCDS DB by CCDS ID:25584.1Re-query CCDS DB by GeneID:208659See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020938.7 ENSMUSP00000020938.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020938.7Link to Ensembl Protein Viewer:ENSMUSP00000020938.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020938Re-query CCDS DB by Protein ID:ENSMUSP00000020938
Original member Current member EBI ENSMUST00000155559.7 ENSMUSP00000116687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155559.7Link to Ensembl Protein Viewer:ENSMUSP00000116687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155559Re-query CCDS DB by Protein ID:ENSMUSP00000116687
Original member Current member NCBI NM_153782.2 NP_722477.1 Accepted alive Link to Nucleotide Sequence:NM_153782.2Link to Protein Sequence:NP_722477.1Re-query CCDS DB by Nucleotide ID:NM_153782Re-query CCDS DB by Protein ID:NP_722477Link to BLAST:NP_722477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722477.1 541 Q8CID3 541 100% 0 0

Chromosomal Locations for CCDS 25584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 109673300 109673564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109674623 109674682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109675106 109675187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109675843 109675952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109677154 109677334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109677771 109677886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109678356 109678448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109682837 109682915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109684638 109684688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109685343 109685527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 109721312 109721715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGCCCGGGCTGCGCAGGGACCGCCTGCTGGCCCTGCTGCTCCTGGGCGCGCTCTTCTCCGCCGACCTCT
ACTTCCACCTCTGGCCGCAAGTGCAGCGCCAGCTCCGGCCGGGCGAGCGCCCCGCCGCCTGCCCGTGCTC
TGGCCGCGCCCCCTCCGCGTCTCTACACTCAGCCGCAGCCTCCCGAGACCTTGGCACAGCCTCGCACAAC
TTTTCAGGAGCTTTGCCCCGGGTTGAGCATCCCAGCCGCGGCCACCCTGCCCCGCGCTCTAAGCTGCAGG
CCCTCTTCGCCCACTCGCTCTACCAAGTCCTGGAGGATCCGCCTCTCCTGGGACCCGAAGACTGGCTCCT
GGCCAGCCAGGAGGCGCTGCGGTATTACCGGAGGAAGGTGGCCCGCTGGAACAGACGGCACAAGATATAC
AAAGAACAATTCAACCTTACCTCCTTGGATCCCCCGCTCCAGTTTCGACCAGAGGCCAGCTGGGTCCAGT
TCCACTTGGGGATCAACAGCCACGGGCTGTACTCCAGGTCCAGCCTTGCCATCAGCAAGCTCCTCCATGA
CATGAGACACTTCCCCACCATCAGTGCTGATTACAGCCAGGATGAAAAAGCCTTGCTAGGGGCCTGTGAC
TGCTCACAGATTGTGAAACCCAGTGGGGTCCACCTGAAATTGGTTCTGAGGTTCTCGGACTTCGGGAAAG
CCATGTTCAAACCCATGAGACAGCAGCGAGAGGAGGAGACGCCTGAGGACTTCTTCTATTTCATAGACTT
TCAGAGACACAATGCTGAGATCGCAGCTTTCCACCTGGACAGGATTCTGGACTTCCGACGGGTACCGCCA
ACAGTAGGGAGGCTAGTGAATGTCACCAAGGAAATCCTAGAGGTCACCAAGAACGAGATCCTACAGAGTG
TGTTCTTTGTGTCTCCAGCTAACAACGTGTGCTTCTTCGCCAAGTGTCCGTACATGTGCAAGACCGAGTA
CGCTGTCTGTGGCAACCCACACCTGCTGGAAGGCTCCCTCTCCGCCTTCCTGCCATCCCTCAACCTAGCC
CCCAGACTGTCTGTGCCCAACCCCTGGATCCGTTCCTACTCGCTGTCAGGAAAAGAGGAGTGGGAGCTCA
ACCCCCTTTACTGTGACACAGTCAAGCAGATCTACCCGTACAACAGCAGCAACAGACTCCTCGGCATCAT
TGACATGGCCGTCTTTGACTTCCTGATTGGAAATATGGACCGACACCATTATGAGATGTTCACCAAATTT
GGGGATGATGGATACCTTATTCATCTTGACAATGCCAGAGGGTTCGGACGACATTCCCAGGATGAAATCT
CTATCCTCGCCCCTCTAGCGCAGTGTTGCATGATCAAAAGGAAAACACTCTTGCACCTTCAGCTGCTGGC
TCAGGCTGACTACAGGCTCAGCGACGTGATGCGGGAGTCACTTCTAGAAGACCAGCTCAGCCCTGTCCTC
ACAGAACCCCACCTCCTGGCCCTGGACCGCAGACTCCAGATCATCCTGAAGACCGTGGAGGACTGCATAG
AGGCCCACGGCGAGCGAAGAGTCATAGCCGAAGGGTCAGCACAACGTTCGGCTCCAGACTCCGGCCAGGC
TAATCTGACGAGCTAA

Translation (541 aa):
MPGLRRDRLLALLLLGALFSADLYFHLWPQVQRQLRPGERPAACPCSGRAPSASLHSAAASRDLGTASHN
FSGALPRVEHPSRGHPAPRSKLQALFAHSLYQVLEDPPLLGPEDWLLASQEALRYYRRKVARWNRRHKIY
KEQFNLTSLDPPLQFRPEASWVQFHLGINSHGLYSRSSLAISKLLHDMRHFPTISADYSQDEKALLGACD
CSQIVKPSGVHLKLVLRFSDFGKAMFKPMRQQREEETPEDFFYFIDFQRHNAEIAAFHLDRILDFRRVPP
TVGRLVNVTKEILEVTKNEILQSVFFVSPANNVCFFAKCPYMCKTEYAVCGNPHLLEGSLSAFLPSLNLA
PRLSVPNPWIRSYSLSGKEEWELNPLYCDTVKQIYPYNSSNRLLGIIDMAVFDFLIGNMDRHHYEMFTKF
GDDGYLIHLDNARGFGRHSQDEISILAPLAQCCMIKRKTLLHLQLLAQADYRLSDVMRESLLEDQLSPVL
TEPHLLALDRRLQIILKTVEDCIEAHGERRVIAEGSAQRSAPDSGQANLTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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