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Report for CCDS27614.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27614.1 Public Mus musculus 15 Tst 23 108 98 CCDS HistoryNCBI Gene:22117Re-query CCDS DB by CCDS ID:27614.1Re-query CCDS DB by GeneID:22117See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27614.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058659.8 ENSMUSP00000055743.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058659.8Link to Ensembl Protein Viewer:ENSMUSP00000055743.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000058659Re-query CCDS DB by Protein ID:ENSMUSP00000055743
Original member Current member NCBI NM_009437.5 NP_033463.1 Accepted alive Link to Nucleotide Sequence:NM_009437.5Link to Protein Sequence:NP_033463.1Re-query CCDS DB by Nucleotide ID:NM_009437Re-query CCDS DB by Protein ID:NP_033463Link to BLAST:NP_033463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033463.1 297 P52196 297 100% 0 0

Chromosomal Locations for CCDS 27614.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78399732 78400030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78405239 78405833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGGTACATCAGGTGCTCTACCGGGCGCTGGTATCCACCAAGTGGCTGGCGGAATCCATTCGGTCTGGCC
GCCTGGGGCCCAGCCTTCGGGTGCTGGACGCGTCTTGGTACTCACCCGGGACCCGCCAGGCACGCAAAGA
GTACCAGGAGCGACACGTGCCTGGCGCGTCCTTCTTTGATATAGAGGAATGCCGGGACACGACTTCGCCT
TATGAGATGATGCTGCCCAGTGAGGCCCACTTTGGGGACTATGTGGGCAACCTGGGCATAAGCAACGACA
CACATGTGGTGGTATACGATGGAGATGACCTGGGCAGCTTCTATGCACCCAGAGTCTGGTGGATGTTTCG
TGTGTTTGGCCACCGCACAGTGTCAGTGCTCAATGGTGGCTTCCGGAACTGGCTGAAGGAGGGCCACCCG
GTGACATCTGAGCCCTCGAGGCCAGAGCCAGCCGTTTTCAAAGCCACACTGAATCTCTCCCTGCTCAAGA
CCTATGAGCAGGTCCTAGAGAATCTCCAGTCTAAAAGGTTCCAGCTGGTGGACTCTCGGGCCCAAGGACG
GTACCTGGGCACACAACCGGAGCCGGATATAGTAGGACTAGACTCGGGCCACATCCGTGGCTCAGTCAAC
ATGCCCTTCATGGACTTCCTGACGAAAGATGGCTTCGAGAAGAGCCCAGAGGAGCTGCGTGCCATATTCC
AGGACAAGAAGGTGGACCTCTCACAGCCCCTCATTGCCACGTGCCGCAAGGGGGTCACTGCCTGTCACGT
TGCCCTGGCTGCCTACCTTTGTGGCAAACCCGATGTGGCTGTTTACGATGGCTCCTGGTCAGAGTGGTTC
CGCAGGGCACCCCCAGAGACCCGTGTGTCCCAGGGGAAGAGTGGGAAGGCCTGA

Translation (297 aa):
MVHQVLYRALVSTKWLAESIRSGRLGPSLRVLDASWYSPGTRQARKEYQERHVPGASFFDIEECRDTTSP
YEMMLPSEAHFGDYVGNLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHP
VTSEPSRPEPAVFKATLNLSLLKTYEQVLENLQSKRFQLVDSRAQGRYLGTQPEPDIVGLDSGHIRGSVN
MPFMDFLTKDGFEKSPEELRAIFQDKKVDLSQPLIATCRKGVTACHVALAAYLCGKPDVAVYDGSWSEWF
RRAPPETRVSQGKSGKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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