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Report for CCDS22820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22820.1 Public Mus musculus 9 Sesn3 23 108 98 CCDS HistoryNCBI Gene:75747Re-query CCDS DB by CCDS ID:22820.1Re-query CCDS DB by GeneID:75747See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22820.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208222.1 ENSMUSP00000146362.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208222.1Link to Ensembl Protein Viewer:ENSMUSP00000146362.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208222Re-query CCDS DB by Protein ID:ENSMUSP00000146362
Original member Current member NCBI NM_030261.4 NP_084537.2 Accepted alive Link to Nucleotide Sequence:NM_030261.4Link to Protein Sequence:NP_084537.2Re-query CCDS DB by Nucleotide ID:NM_030261Re-query CCDS DB by Protein ID:NP_084537Link to BLAST:NP_084537.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084537.2 492 Q9CYP7 492 100% 0 0

Chromosomal Locations for CCDS 22820.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14276552 14276629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14306199 14306264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14308461 14308658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14310248 14310430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14314496 14314732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14316066 14316240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14320295 14320413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14321072 14321262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14322563 14322707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14325620 14325706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGAACCGCGGTGGCAGCAGCGCGTCGGCCTCGGCCAACTACCTGCTCTGCACCAACTGCCGGAAAGTGC
TGCGGAAGGACAAAAGAATCCGAGTGTCTCAACCCCTGACAAGAGGACCAAGTGCCTTTATTCCAGAGAA
GGAAGTTGTCCAAGCAAATACGGCGGATGAACGAACAAACTTTCTTGTGGAAGAGTACTCTACATCCGGT
CGCCTGGACAACATCACACAGGTGATGAGCTTGCACACTCAGTACCTGGAATCTTTCTTGCGGAGCCAGT
TCTACATGCTGCGTATGGACGGCCCCCTTCCCCTCCCAGACAGGCACTACATTGCCATCATGGCTGCAGC
CAGACACCAGTGTTCCTACCTAATAAACATGCATGTGGATGAATTTTTAAAGACTGGAGGGATCGCTGAG
TGGCTGAATGGCTTGGAATATGTACCACAAAGACTGAGAAATCTTAATGAAATTAACAAGCTGCTGGCAC
ACCGGCCCTGGCTGATCACAAAAGAGCACATTCAGAAACTTGTCAAAACTGGAGAAAATAATTGGTCCCT
GCCTGAGCTAGTGCACGCCGTGGTCCTCTTGGCTCACTATCACGCTTTGGCCAGCTTTGTTTTTGGTAGT
GGCATCAATCCAGAGAGAGACCCAGGAATCGCCAATGGGTTCAGACTAATCTCTGTGAGCAGCTTCTGTG
TGTGTGACCTGGCCAATGACAACAGCATCGAGAACACCTCCCTGGCGGGCAGCAACTTTGGGATTGTGGA
TTCCCTAGGCGAGCTGGAAGCCTTAATGGAAAGGATGAAAAGGCTTCAGGAAGACAGGGAAGATGACGAG
ACCACTCGGGAAGAAATGACCACGCGTTTTGAGAAGGAAAAGAAAGAAAGTCTCTTTGTGGTCCCTGGAG
AAACTTTACATGCGTTTCCTCACTCAGATTTTGAAGATGATGTGATTGTAACAGCCGATGTCTCTCGATA
CATTGAAGACCCAAGCTTTGGGTACGAAGACTTTGCCAGGCGAGGAGAAGAACATTTGCCAACATTCCGA
GCCCAGGACTACACCTGGGAAAACCATGGGTTCTCACTGGTGAACAGGCTTTACTCTGACATTGGACATC
TCCTGGATGAGAAGTTTCGAATGGTCTACAATCTCACCTACAACACAATGGCCACCCATGAGGATGTTGA
CACGACCACACTGCGCAGAGCTTTGTTTAACTATGTTCACTGTATGTTTGGAATCAGGTATGATGACTAT
GACTATGGAGAAGTTAACCAGTTACTTGAACGGAGCCTGAAGGTTTACATCAAGACAGTGACCTGCTACC
CTGAGAGAACCACGAAGCGCATGTATGACAGCTACTGGCGCCAGTTCACTCACTCAGAGAAGGTCCACGT
GAATCTGCTTCTGATGGAAGCACGGATGCAGGCCGAGCTGCTTTATGCTCTGCGAGCCATAACTCGGCAT
CTGACCTGA

Translation (492 aa):
MNRGGSSASASANYLLCTNCRKVLRKDKRIRVSQPLTRGPSAFIPEKEVVQANTADERTNFLVEEYSTSG
RLDNITQVMSLHTQYLESFLRSQFYMLRMDGPLPLPDRHYIAIMAAARHQCSYLINMHVDEFLKTGGIAE
WLNGLEYVPQRLRNLNEINKLLAHRPWLITKEHIQKLVKTGENNWSLPELVHAVVLLAHYHALASFVFGS
GINPERDPGIANGFRLISVSSFCVCDLANDNSIENTSLAGSNFGIVDSLGELEALMERMKRLQEDREDDE
TTREEMTTRFEKEKKESLFVVPGETLHAFPHSDFEDDVIVTADVSRYIEDPSFGYEDFARRGEEHLPTFR
AQDYTWENHGFSLVNRLYSDIGHLLDEKFRMVYNLTYNTMATHEDVDTTTLRRALFNYVHCMFGIRYDDY
DYGEVNQLLERSLKVYIKTVTCYPERTTKRMYDSYWRQFTHSEKVHVNLLLMEARMQAELLYALRAITRH
LT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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