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Report for CCDS20570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20570.1 Public Mus musculus 6 Foxm1 23 108 98 CCDS HistoryNCBI Gene:14235Re-query CCDS DB by CCDS ID:20570.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073316.12 ENSMUSP00000073041.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073316.12Link to Ensembl Protein Viewer:ENSMUSP00000073041.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073316Re-query CCDS DB by Protein ID:ENSMUSP00000073041
Original member Current member NCBI NM_008021.4 NP_032047.4 Accepted alive Link to Nucleotide Sequence:NM_008021.4Link to Protein Sequence:NP_032047.4Re-query CCDS DB by Nucleotide ID:NM_008021Re-query CCDS DB by Protein ID:NP_032047Link to BLAST:NP_032047.4

Chromosomal Locations for CCDS 20570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128365705 128366200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128367287 128367438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128369294 128369485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128370957 128371085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128371968 128372012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128372534 128372603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128372777 128373966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2274 nt):
ATGAGAACCAGCCCCCGCCGGCCACTGATTCTCAAAAGACGGAGGCTGCCCCTTCCTGTCCAGAATGCCC
CGAGTGAAACATCAGAGGAAGAAGCAAAGAGGTCCCCTGCCCAGCCGGAGCCTGCTCCAGCACAGGCCTC
CCAAGAGGTGGCAGAGTCCAGCTCTTGCAAATTTCCAGCCGGAATCAAGATTATCAACCACCCCACCACG
CCCAACACACAAGTGGTGGCCATCCCCAGCAACGCTGATATCCAGAGCATCATCACAGCGCTAACTGCCA
AAGGGAAGGAGAGCGGCAGCAGCGGGCCCAACCGGTTCATCCTCATCAGCTCTGGGGGGCCCTCCTCTCA
CCCTTCCCAGCCTCAAGCCCACAGCAGCCGGGATTCCAAGAGAGCAGAGGTGATCACGGAGACGTTGGGA
CCGAAGCCAGCAGCTAAGGGTGTGCCTGTTCCCAAGCCTCCTGGAGCCCCTCCAAGGCAAAGACAGGAGA
GCTATGCTGGTGGTGAGGCGGCAGGCTGCACGCTGGACAACAGCTTAACCAATATCCAGTGGCTTGGAAA
GATGAGTTCTGACGGGCTGGGCCCCTGCAGCGTTAAGCAGGAACTGGAAGAGAAGGAGAATTGTCACCTG
GAGCAGAATCGGGTTAAGGTTGAGGAGCCCTCAGGAGTGTCAACATCTTGGCAGGACTCTGTGTCTGAGA
GGCCACCCTACTCTTATATGGCCATGATACAGTTTGCCATCAACAGCACTGAGAGAAAGCGCATGACCTT
GAAGGACATCTACACTTGGATTGAGGACCACTTCCCTTACTTTAAGCACATTGCCAAGCCAGGCTGGAAG
AACTCTATTCGTCACAACCTTTCTCTCCATGACATGTTTGTTCGAGAGACATCTGCCAATGGCAAGGTCT
CCTTCTGGACCATTCACCCAAGTGCCAATCGCTACTTGACATTGGACCAAGTGTTTAAGCCACTGGAACC
AGGGTCTCCACAATCGCCCGAGCACTTGGAATCACAGCAGAAACGACCCAATCCTGAGCTCCATAGAAAT
GTGACCATCAAAACTGAAATCCCACTGGGCGCACGGCGAAAGATGAAGCCTCTGCTCCCTCGGGTTAGCT
CATACCTGGTGCCCATCCAGTTCCCAGTGAACCAGTCCCTGGTGTTACAGCCCTCAGTGAAGGTTCCCTT
GCCTCTGGCAGCATCGCTTATGAGCTCAGAGCTCGCCCGTCATAGCAAGCGAGTCCGCATTGCACCCAAG
GTGTTGCTATCCAGTGAAGGAATAGCCCCGCTTCCTGCCACAGAACCACCGAAGGAGGAGAAACCCCTGC
TTGGAGGGGAAGGGCTGTTGCCTTTACTTCCTATTCAGTCCATTAAGGAAGAAGAAATGCAGCCTGAGGA
GGACATAGCACACTTAGAGAGGCCTATCAAAGTGGAGAGCCCTCCCTTGGAAGAGTGGCCCTCTCCGTGT
GCATCGCTCAAAGAGGAGCTATCCAACTCCTGGGAAGATTCTTCCTGCTCTCCTACCCCAAAGCCCAAGA
AGTCCTACTGTGGGCTCAAGTCCCCAACGCGCTGTGTCTCAGAAATGCTGGTGACTAAGCGAAGAGAGAA
AAGGGAGGTGAGCCGATCCCGGAGGAAACAGCACCTTCAGCCCCCCTGTCTGGATGAGCCTGACCTGTTC
TTCTCAGAGGACTCCAGCACATTTCGGCCAGCCGTGGAGCTCCTGGCGGAGTCTTCCGAGCCTGCACCCC
ACCTCAGCTGCCCTCAGGAAGAGGGAGGACCTTTCAAGACCCCCATCAAGGAGACATTGCCTGTCTCCTC
CACTCCTAGCAAGTCTGTGCTCTCTAGAGACCCTGAGTCCTGGAGGCTCACACCTCCAGCCAAAGTTGGG
GGGTTAGATTTCAGCCCAGTACGAACCCCCCAGGGTGCCTTTGGCCTTCTGCCTGACTCACTGGGGTTGA
TGGAGCTGAATACCACCCCTTTGAAAAGTGGTCCTCTCTTTGACTCGCCCCGGGAGCTCCTCAACTCAGA
GCCCTTTGACCTGGCCTCTGACCCCTTCGGCAGCCCTCCACCACCACATGTGGAAGGCCCCAAGCCTGGC
TCCCCCGAGCTGCAGATTCCCAGCCTTTCAGCCAACCGTTCTCTCACAGAAGGCCTTGTCCTGGACACAA
TGAATGATAGCCTCAGCAAGATCCTTCTAGACATCAGTTTCCCTGGCCTGGAGGAGGACCCTCTGGGCCC
TGACAACATCAACTGGTCTCAGTTCATCCCTTAG

Translation (757 aa):
MRTSPRRPLILKRRRLPLPVQNAPSETSEEEAKRSPAQPEPAPAQASQEVAESSSCKFPAGIKIINHPTT
PNTQVVAIPSNADIQSIITALTAKGKESGSSGPNRFILISSGGPSSHPSQPQAHSSRDSKRAEVITETLG
PKPAAKGVPVPKPPGAPPRQRQESYAGGEAAGCTLDNSLTNIQWLGKMSSDGLGPCSVKQELEEKENCHL
EQNRVKVEEPSGVSTSWQDSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWK
NSIRHNLSLHDMFVRETSANGKVSFWTIHPSANRYLTLDQVFKPLEPGSPQSPEHLESQQKRPNPELHRN
VTIKTEIPLGARRKMKPLLPRVSSYLVPIQFPVNQSLVLQPSVKVPLPLAASLMSSELARHSKRVRIAPK
VLLSSEGIAPLPATEPPKEEKPLLGGEGLLPLLPIQSIKEEEMQPEEDIAHLERPIKVESPPLEEWPSPC
ASLKEELSNSWEDSSCSPTPKPKKSYCGLKSPTRCVSEMLVTKRREKREVSRSRRKQHLQPPCLDEPDLF
FSEDSSTFRPAVELLAESSEPAPHLSCPQEEGGPFKTPIKETLPVSSTPSKSVLSRDPESWRLTPPAKVG
GLDFSPVRTPQGAFGLLPDSLGLMELNTTPLKSGPLFDSPRELLNSEPFDLASDPFGSPPPPHVEGPKPG
SPELQIPSLSANRSLTEGLVLDTMNDSLSKILLDISFPGLEEDPLGPDNINWSQFIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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