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Report for CCDS27888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27888.1 Public Mus musculus 15 Atp5mc2 23 108 98 CCDS HistoryNCBI Gene:67942Re-query CCDS DB by CCDS ID:27888.1Re-query CCDS DB by GeneID:67942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075630.9 ENSMUSP00000075057.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075630.9Link to Ensembl Protein Viewer:ENSMUSP00000075057.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000075630Re-query CCDS DB by Protein ID:ENSMUSP00000075057
Original member Current member EBI ENSMUST00000185641.6 ENSMUSP00000140414.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185641.6Link to Ensembl Protein Viewer:ENSMUSP00000140414.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185641Re-query CCDS DB by Protein ID:ENSMUSP00000140414
Original member Current member NCBI NM_026468.2 NP_080744.1 Accepted alive Link to Nucleotide Sequence:NM_026468.2Link to Protein Sequence:NP_080744.1Re-query CCDS DB by Nucleotide ID:NM_026468Re-query CCDS DB by Protein ID:NP_080744Link to BLAST:NP_080744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080744.1 146 P56383 146 100% 0 0

Chromosomal Locations for CCDS 27888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102663014 102663128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102665054 102665247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102665763 102665855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102667711 102667749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGTACGCCTGCTCCAAGTTCGTCTCTACCCGCTCCCTGATCAGGAGCACCTCTCTCAGGAGCACCTCTC
AGCTGCTGAGTCGTCCGCTGTCTGCAGTGGAGTTGAAGCGACCACAGATGCCAACAGATGAGAGCCTCAG
CAGCTTGGCGGTCCGGCGGCCTCTGACTTCACTTATCCCTAGCCGCAGTTTCCAAACCAGCGCCATTTCA
AGGGACATCGACACAGCTGCCAAGTTCATTGGAGCTGGGGCTGCGACAGTTGGGGTGGCTGGCTCTGGGG
CAGGGATTGGGACTGTTTTTGGGAGTCTCATCATTGGCTATGCCAGGAACCCTTCTCTGAAGCAACAACT
CTTCTCCTACGCGATTCTGGGCTTTGCCCTCTCAGAGGCCATGGGGCTCTTTTGCCTAATGGTGGCCTTT
CTCATCCTCTTCGCCATGTGA

Translation (146 aa):
MYACSKFVSTRSLIRSTSLRSTSQLLSRPLSAVELKRPQMPTDESLSSLAVRRPLTSLIPSRSFQTSAIS
RDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAF
LILFAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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