NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21943.1 Public Mus musculus 7 Clrn3 23 108 98 CCDS HistoryNCBI Gene:212070Re-query CCDS DB by CCDS ID:21943.1Re-query CCDS DB by GeneID:212070See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053716.7 ENSMUSP00000056245.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053716.7Link to Ensembl Protein Viewer:ENSMUSP00000056245.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053716Re-query CCDS DB by Protein ID:ENSMUSP00000056245
Original member Current member NCBI NM_178669.5 NP_848784.1 Accepted alive Link to Nucleotide Sequence:NM_178669.5Link to Protein Sequence:NP_848784.1Re-query CCDS DB by Nucleotide ID:NM_178669Re-query CCDS DB by Protein ID:NP_848784Link to BLAST:NP_848784.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848784.1 226 Q8BHH8 226 100% 0 0

Chromosomal Locations for CCDS 21943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135513939 135514210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135518447 135518626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135528275 135528503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGCCAACCACACAGAAAACGTTGATGTTCCTGTCTGGCTTTCTCACAAGCCTGGGCTCAGTTGTTGTCA
TCTGCTCCATTCTTGCGACTCAGGCATGGATCACCAGCAGGATTTTCTTTACAGATGCTATCTCCAACGG
TACCATTGTTATTACCTATGGGCTCTTCCGTGGTACGAGTGCTCAAGAGTTGAATGAAGGCCTTCAAGAT
CTGGACAAAAACTTTGAAGTTTTAGGGATATTGGACAATTCTTCCCAGAAGTCTTTGCACCTGGTGGTCA
TCCTCCTCCTGATCCTGAGTCTGGCAGCTTCCGTGCTGAGCTCAGTGTTCACCTTCTACAACAGCATCAG
CAACCCTTACCAGACGTTCCTGGGACCTATGGGTGTCTATACCTGGAATGGACTCAGCGCATCCTTTGTG
TTTCTGGCCATGGTTCTGTTCGTGGGGAATGCCGAGTCCAACCATCTCTCAGACAAGCTCTCCCAGAAGC
TTTATCCAGATACCACAAACAAGAGAACAACCCACACTTACGGATACTCGTTTTGGCTCACCCTGCATGT
CATCTTTCTCAATATTGTCACTGCGGTCATCATCATTTTCTATCAGAAGGCCCGATACCGGCAGAAGCAG
GAGCAGAGGAAGCCGGTGGAATATGCTCCAAGGGATGGCATTTTATTCTGA

Translation (226 aa):
MPTTQKTLMFLSGFLTSLGSVVVICSILATQAWITSRIFFTDAISNGTIVITYGLFRGTSAQELNEGLQD
LDKNFEVLGILDNSSQKSLHLVVILLLILSLAASVLSSVFTFYNSISNPYQTFLGPMGVYTWNGLSASFV
FLAMVLFVGNAESNHLSDKLSQKLYPDTTNKRTTHTYGYSFWLTLHVIFLNIVTAVIIIFYQKARYRQKQ
EQRKPVEYAPRDGILF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH