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Report for CCDS25123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25123.1 Public Mus musculus 11 Rab11fip4 23 108 98 CCDS HistoryNCBI Gene:268451Re-query CCDS DB by CCDS ID:25123.1Re-query CCDS DB by GeneID:268451See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017783.12 ENSMUSP00000017783.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017783.12Link to Ensembl Protein Viewer:ENSMUSP00000017783.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000017783Re-query CCDS DB by Protein ID:ENSMUSP00000017783
Original member Current member NCBI NM_175543.3 NP_780752.1 Accepted alive Link to Nucleotide Sequence:NM_175543.3Link to Protein Sequence:NP_780752.1Re-query CCDS DB by Nucleotide ID:NM_175543Re-query CCDS DB by Protein ID:NP_780752Link to BLAST:NP_780752.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780752.1 635 Q8BQP8 635 100% 0 0

Chromosomal Locations for CCDS 25123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 79591276 79591434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79619629 79619716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79620467 79620555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79680788 79681011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79683341 79683535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79684223 79684357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79684601 79684636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79685028 79685127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79685386 79685489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79686552 79686692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79689615 79689696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79690458 79690595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79690672 79690827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79691756 79691899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 79692723 79692839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGCGGGTGGCGCGGGCTGGGCGGGCGCCCCCGCGGCTCTGCTGCGCTCCGTGCGCCGCCTGCGCGAAG
TGTTCGAGGTGTGCGGCCGCGACCCCGACGGCTTTCTACGCGTGGAGCGCGTCGCGGCGCTCGGCCTGCG
CTTCGGGCAAGGAGAGGAGGTGGAAAAACTTGTGAAGTGTTTGGATCCCAATGACCTGGGGAGAATCAAC
TTCAAGGATTTTTGCCGCGGAGTATTCGCCATGAAAGGGTGTGAGGAGCTGCTGAAGGACGTGCTGTCGG
TGGAGAGCGCAGGGACCCTGCCATGTTCTCCAGACATCCCAGACTGTGTGGAGCAGGGCAGCGACTTCTC
TGGCTCTACTGATGGCGAGCAACTCCCCAGGGAACCCGACTTCTTCCAGGAAGACGAAGAGGAAGCGATG
ACATTGGCCCTACCTGAGGGACCCCAGGAGTTAGACATGGACAGTCCCATGGAGAGCAGCCAAGGCCCGG
AGGGCTCTGTCAAGGGTTGTGGCGAGGAGAAGGAGCCTGAGCTGGGGGGCCTGTTCCTGCCAGAGGACAA
GTGCCTCGTCCTCACTCCATCTGTGACCACATCAGACCTTTCCACTCACTCCACCGCCTCTCTTATCAGC
AACGAGGAGCAATTTGAAGACTATGGCGAGGGGGATGACGTGGACTGTGCTCCCAGCAGCCCATGCCCCG
ACGATGAGACCAGAACCAATGTCTACTCAGATCTGGGATCTTCAGTGTCTTCCAGTGCGGGACAGACCCC
AAGGAAGATGCGACATGCCTACAACAGCGAGCTGCTGGACGTGTACTGCTCTCAGTGCTGCAAGAAGATC
AACCTGCTGAATGACCTGGAGGCCCGGCTGAAGAACCTGAAGGCCAACAGCCCCAACCGGAAGATCTCAA
GCACAGCCTTTGGACGGCAGCTCATGCACAACAGTAACTTCAGCAGCAGTAATGGCAGCACCGAGGACCT
GTTCCGTGACAGCATCGACTCCTGTGACAATGACATCACAGAGAAGGTGAGCTTCCTGGAAAAAAAGGTA
ACAGAACTGGAGAACGACAGCCTGACGAGCGGGGGCCTGAAGAGCAAGCTGAAGCAAGAGAACATGCAGC
TGGTGCACAGGGTGCACGAGCTGGAGGAGATGGTGAAGGATCAGGAGACCACAGCGGAGCAGGCGCTGGA
GGAGGAGGCCCGGCGACACCGTGAGGTCTACTGCAAGCTGGAGCGGGAAAAGAGCACAGAGCTGGAGCTG
CTCAACACCAGGGTGCAGCAGTTGGAGGAAGAGAACACAGATCTGAGAACGACAGTGGCTCGACTCAAGT
CACAGACCGAGAAGCTGGACGAGGAGCGGCAGCGCATGTCTGACCGGCTGGAGGACACCAGCCTGCGACT
GAAGGACGAGATGGACCTTTACAAGCGCATGATGGACAAGCTGCGGCAGAACCGCCTGGAGTTCCAGAAG
GAGCGGGAGGCGACGCAGGAGCTCATCGAGGACTTGCGGAGAGAGCTGGAGCACCTGCAGATGTACAAGC
TGGACTGCGAGCGGCCAGGTAGGGGCCGCAGCTCCTCTGGCCTTGGCGAGTTCAACGCCAGAGCCCGGGA
GGTGGAACTTGAACATGAGGTCAAGCGTCTGAAGCAGGAGAATCACAAGCTGCGGGATCAGAATGATGAT
TTAAATGGGCAGATCCTGAGCCTCAGCCTCTACGAGGCGAAGAACCTCTTTGCAACCCAGACCAAAGCCC
AGTCTCTGGCTGCAGAAATCGACACAGCATCTCGAGATGAGCTAATGGAGGCCCTGAAGGAGCAGGAGGA
GATCAACTTCCGACTGAGACAGTACATGGACAAGATTATCCTGGCTATACTGGACCACAACCCCTCCATC
TTGGAGATTAAACACTGA

Translation (635 aa):
MAGGAGWAGAPAALLRSVRRLREVFEVCGRDPDGFLRVERVAALGLRFGQGEEVEKLVKCLDPNDLGRIN
FKDFCRGVFAMKGCEELLKDVLSVESAGTLPCSPDIPDCVEQGSDFSGSTDGEQLPREPDFFQEDEEEAM
TLALPEGPQELDMDSPMESSQGPEGSVKGCGEEKEPELGGLFLPEDKCLVLTPSVTTSDLSTHSTASLIS
NEEQFEDYGEGDDVDCAPSSPCPDDETRTNVYSDLGSSVSSSAGQTPRKMRHAYNSELLDVYCSQCCKKI
NLLNDLEARLKNLKANSPNRKISSTAFGRQLMHNSNFSSSNGSTEDLFRDSIDSCDNDITEKVSFLEKKV
TELENDSLTSGGLKSKLKQENMQLVHRVHELEEMVKDQETTAEQALEEEARRHREVYCKLEREKSTELEL
LNTRVQQLEEENTDLRTTVARLKSQTEKLDEERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQK
EREATQELIEDLRRELEHLQMYKLDCERPGRGRSSSGLGEFNARAREVELEHEVKRLKQENHKLRDQNDD
LNGQILSLSLYEAKNLFATQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSI
LEIKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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