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Report for CCDS21485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21485.1 Public Mus musculus 7 Slco2b1 23 108 98 CCDS HistoryNCBI Gene:101488Re-query CCDS DB by CCDS ID:21485.1Re-query CCDS DB by GeneID:101488See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21485.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032985.10 ENSMUSP00000032985.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032985.10Link to Ensembl Protein Viewer:ENSMUSP00000032985.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032985Re-query CCDS DB by Protein ID:ENSMUSP00000032985
Original member Current member EBI ENSMUST00000107086.8 ENSMUSP00000102701.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107086.8Link to Ensembl Protein Viewer:ENSMUSP00000102701.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107086Re-query CCDS DB by Protein ID:ENSMUSP00000102701
Original member NCBI NM_001252531.1 NP_001239460.1 Updated not alive Link to Nucleotide Sequence:NM_001252531.1Link to Protein Sequence:NP_001239460.1Re-query CCDS DB by Nucleotide ID:NM_001252531Re-query CCDS DB by Protein ID:NP_001239460
Current member NCBI NM_001252531.2 NP_001239460.1 Accepted alive Link to Nucleotide Sequence:NM_001252531.2Link to Protein Sequence:NP_001239460.1Re-query CCDS DB by Nucleotide ID:NM_001252531Re-query CCDS DB by Protein ID:NP_001239460Link to BLAST:NP_001239460.1
Original member Current member NCBI NM_175316.3 NP_780525.1 Accepted alive Link to Nucleotide Sequence:NM_175316.3Link to Protein Sequence:NP_780525.1Re-query CCDS DB by Nucleotide ID:NM_175316Re-query CCDS DB by Protein ID:NP_780525Link to BLAST:NP_780525.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239460.1 683 Q8BXB6 683 100% 0 0
NP_780525.1 683 Q8BXB6 683 100% 0 0

Chromosomal Locations for CCDS 21485.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 99660041 99660176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99661104 99661224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99661518 99661582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99662447 99662610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99664779 99664944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99666892 99667249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99670950 99671043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99682695 99682885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99685476 99685574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99685884 99686117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99688863 99689025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99690432 99690569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 99691757 99691879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2052 nt):
ATGCCAGACAGGAGCACCAAGACCACAATGGGCACAGAAGATATGCATGAAAGGAAAGTCAGTGTGGAGC
CTCAGGACTCACATCAGGATGCACAGCCCCGCGGGATGTTCCACAACATCAAGTTCTTTGTCCTATGTCA
CAGTCTACTGCAGCTGACACAGCTCATGATCTCTGGCTACCTCAAGAGCTCCATCTCCACAGTGGAAAAG
CGCTTTGGGCTGTCCAGCCAGATCTCAGGGCTGCTAGCTGCTTTCAATGAGGTAGGGAATGTATCCTTGA
TCTTATTTGTGAGCTATTTCGGCAGCCGAGTGCACAGACCCCGGATGATCGGCTATGGGGCTCTCCTGGT
GGCCACGGCAGGCCTGCTCATGGCACTCCCTCACTTCATCTCAGAACCATACCGCTATGACCACAGCAGC
TCCGACAATAGGTCACTGGACTTTGAAGCATCCCTGTGCCTGCCCACGACTATGGCTCCAGCCTCTGCCC
TGTCCAATGGCAGCTGTTCCAGTCACACAGAAACCAAGCATCTGACCATGGTGGGGATCATGTTCGCAGC
ACAGACCCTGCTTGGCATCGGTGGTGTGCCCATACAGCCTTTTGGGATCTCCTACATTGACGACTTTGCC
CACCATAGCAACTCACCCCTCTACATTGGGATCTTGTTTGGAATAACCACGATGGGGCCTGGCCTGGCCT
ATGGGCTGGGTAGCCTCATGCTACGCCTTTATGTGGACATTGACCGGATGCCAGAAGGAGGCATCAACTT
GACTCCAAAAGACCCCAGATGGGTGGGTGCCTGGTGGCTGGGCTTCCTCATCTCTTCAGGACTGGTGGTC
CTGGCTTCCAGCCCCTACTTCTTCTTCCCCAGAGAGATGCCCAAGGAGAAACATGAGTTTCATTTCAGGC
GGAAGGTCTTGGCAAGTGCGGCCTCCACTGCCAGCAAGGGTGAGGACCTCTCCTCCCAGCACGAGCCTTT
AAAGAAACAGGCTGGATTGGCCCAGATTGCCCCAGACTTGACTTTGGTCCAGTTTGTCAAAGTCTTCCCT
AGGGTGCTGCTGCGGAATCTGCGCCACCCCATCTTCTTGCTGGTAGTCCTGTCCCAGGTGTGCACCTCAT
CCATGGTAGCGGGCATGGCCACCTTCCTGCCTAAGTTCCTGGAACGCCAGTTTTCCATCACAGCCTCCTT
TGCCAACATGCTCCTTGGCTGCCTCACTATCCCTCTGGTCATCGTGGGCATCATGATGGGAGGTGTCTTA
GTCAAGCGCCTCCACCTGAGCCCGGTGCAGTGCAGTGCCCTCTGCCTCCTCGGCTCGCTGTTGTGTCTGC
TCTTCAGCGTGCCGCTCTTCTTCATTGGCTGCTCTACCCATCAAATTGCAGGCATCACACAAGACCTGGG
TGCCCAGCCAGGGCCAAGCCTGTTTCCTGGCTGCTCAGAGCCCTGCTCCTGCCAATCAGATGACTTTAAC
CCTGTTTGTGATACCAGTGCCTATGTGGAGTACACCACACCCTGCCATGCAGGCTGCACAGGTCGTGTCG
TCCAGGAGGCTCTGGGCAAAAGCCAGGTCTTCTACACCAACTGCAGCTGTGTGGCAGGGAATGGCACTGT
TCCTGCAGGTTCCTGTGAGTCAGCCTGCAGCCGCCTGGTGCTGCCCTTCATTGTCCTGTTCAGCCTGGGG
GCGGGACTGGCCAGCATCACCCACACACCTTCCTTCATGCTCATCCTGAGAGGTGTGAAGAAAGAAGATA
AAACCCTGGCAGTGGGGATGCAGTTCATGCTCCTGAGAGTGCTGGCCTGGATGCCCAGCCCTGTGATCCA
TGGCAGTGCCATCGATACCACCTGTGTTCACTGGGCCCTGACCTGTGGGCGGAGAGCTGTCTGCCGCTAC
TACGACCATGACCTGCTCCGAAACCGATTCATAGGCCTCCAGTTCTTCTTCAAAAGTGGATCCCTGGTGT
GCTTTACCTTAGTTTTGGCCATCTTGAGGCAACAGAGCAGAGAGGCCAGCACCAGGACCACTGTAAAGAG
CTCGGAACTACAACAGCTATAA

Translation (683 aa):
MPDRSTKTTMGTEDMHERKVSVEPQDSHQDAQPRGMFHNIKFFVLCHSLLQLTQLMISGYLKSSISTVEK
RFGLSSQISGLLAAFNEVGNVSLILFVSYFGSRVHRPRMIGYGALLVATAGLLMALPHFISEPYRYDHSS
SDNRSLDFEASLCLPTTMAPASALSNGSCSSHTETKHLTMVGIMFAAQTLLGIGGVPIQPFGISYIDDFA
HHSNSPLYIGILFGITTMGPGLAYGLGSLMLRLYVDIDRMPEGGINLTPKDPRWVGAWWLGFLISSGLVV
LASSPYFFFPREMPKEKHEFHFRRKVLASAASTASKGEDLSSQHEPLKKQAGLAQIAPDLTLVQFVKVFP
RVLLRNLRHPIFLLVVLSQVCTSSMVAGMATFLPKFLERQFSITASFANMLLGCLTIPLVIVGIMMGGVL
VKRLHLSPVQCSALCLLGSLLCLLFSVPLFFIGCSTHQIAGITQDLGAQPGPSLFPGCSEPCSCQSDDFN
PVCDTSAYVEYTTPCHAGCTGRVVQEALGKSQVFYTNCSCVAGNGTVPAGSCESACSRLVLPFIVLFSLG
AGLASITHTPSFMLILRGVKKEDKTLAVGMQFMLLRVLAWMPSPVIHGSAIDTTCVHWALTCGRRAVCRY
YDHDLLRNRFIGLQFFFKSGSLVCFTLVLAILRQQSREASTRTTVKSSELQQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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