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Report for CCDS28730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28730.1 Public Mus musculus 17 Polr1h 23 108 98 CCDS HistoryNCBI Gene:66136Re-query CCDS DB by CCDS ID:28730.1Re-query CCDS DB by GeneID:66136See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113669.8 ENSMUSP00000109299.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113669.8Link to Ensembl Protein Viewer:ENSMUSP00000109299.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113669Re-query CCDS DB by Protein ID:ENSMUSP00000109299
Original member Current member EBI ENSMUST00000172518.7 ENSMUSP00000133651.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172518.7Link to Ensembl Protein Viewer:ENSMUSP00000133651.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172518Re-query CCDS DB by Protein ID:ENSMUSP00000133651
Original member Current member NCBI NM_001355422.1 NP_001342351.1 Accepted alive Link to Nucleotide Sequence:NM_001355422.1Link to Protein Sequence:NP_001342351.1Re-query CCDS DB by Nucleotide ID:NM_001355422Re-query CCDS DB by Protein ID:NP_001342351Link to BLAST:NP_001342351.1
Original member Current member NCBI NM_023162.4 NP_075651.1 Accepted alive Link to Nucleotide Sequence:NM_023162.4Link to Protein Sequence:NP_075651.1Re-query CCDS DB by Nucleotide ID:NM_023162Re-query CCDS DB by Protein ID:NP_075651Link to BLAST:NP_075651.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342351.1 123 Q791N7 123 100% 0 0
NP_075651.1 123 Q791N7 123 100% 0 0

Chromosomal Locations for CCDS 28730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36954528 36954552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36957566 36957675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36957832 36957932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36958149 36958284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGAGCTGGCCCGCCCCCGCTCCAACTTTCAATCAGACTTGGATTTCTGCCCAGATTGTGGCTCAGTCC
TGCCGCTGCCTGGAATTCAGGACACTGTCATATGTTCGCGTTGTGGCTTCTCCATCGATGTGCGAGATTG
TGAAGGGAAGGTTGTGAAGACCTCAGTAGTGTTCAACAAGCTGGGGGCTACCATACCTTTGTCTGTGGAT
GAGGGACCTGAATTACAGGGACCAGTGATTGACAGGCGCTGCCCTCGATGTGGTCACGAGGGAATGGCAT
ATCACACCAGACAGATGCGCTCAGCTGATGAAGGACAGACGGTCTTCTATACCTGTATCAACTGCAAGTT
TCAGGAAAAGGAAGATTCTTGA

Translation (123 aa):
MELARPRSNFQSDLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSVD
EGPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINCKFQEKEDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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