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Report for CCDS18959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18959.1 Public Mus musculus 4 Rbp7 23 108 98 CCDS HistoryNCBI Gene:63954Re-query CCDS DB by CCDS ID:18959.1Re-query CCDS DB by GeneID:63954See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18959.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030848.2 ENSMUSP00000030848.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030848.2Link to Ensembl Protein Viewer:ENSMUSP00000030848.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030848Re-query CCDS DB by Protein ID:ENSMUSP00000030848
Original member Current member NCBI NM_022020.2 NP_071303.1 Accepted alive Link to Nucleotide Sequence:NM_022020.2Link to Protein Sequence:NP_071303.1Re-query CCDS DB by Nucleotide ID:NM_022020Re-query CCDS DB by Protein ID:NP_071303Link to BLAST:NP_071303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071303.1 134 Q9EPC5 134 100% 0 0

Chromosomal Locations for CCDS 18959.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149449873 149449923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149452849 149452950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149453356 149453534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149454878 149454950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (405 nt):
ATGCCAGCAGACCTCAGCGGTACCTGGAATCTTCTCAGCAGCGACAACTTCGAGGGCTACATGCTGGCCC
TGGGTATTGACTTTGCAACTCGTAAGATTGCCAAGTTGCTGAAGCCACAGAAAGTGATTGAGCAAAATGG
GGACTCCTTCACCATCCAGACGTGCAGCAGCCTCAGGAACTACCTTGTAAAATTCAAAGTTGGAGAAGAG
TTTGAGGAGGATAACAAAGGCCTGGATAACAGAAAATGCACGAGCCTGGTTACCTGGGAGAATGACAAAC
TCACTTGCGTACAGAGAGGAGAGAAGAAAAACAGAGGCTGGAGCCACTGGATCGAAGGGGACCAGCTCCA
CCTGGAAATGTTCTGCGAAGGCCAGGTGTGCAAGCAAACCTTCCAGAGAGCCTGA

Translation (134 aa):
MPADLSGTWNLLSSDNFEGYMLALGIDFATRKIAKLLKPQKVIEQNGDSFTIQTCSSLRNYLVKFKVGEE
FEEDNKGLDNRKCTSLVTWENDKLTCVQRGEKKNRGWSHWIEGDQLHLEMFCEGQVCKQTFQRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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