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Report for CCDS22546.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22546.1 Public Mus musculus 8 Pllp 23 108 98 CCDS HistoryNCBI Gene:67801Re-query CCDS DB by CCDS ID:22546.1Re-query CCDS DB by GeneID:67801See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22546.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034227.5 ENSMUSP00000034227.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034227.5Link to Ensembl Protein Viewer:ENSMUSP00000034227.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034227Re-query CCDS DB by Protein ID:ENSMUSP00000034227
Original member Current member NCBI NM_026385.4 NP_080661.1 Accepted alive Link to Nucleotide Sequence:NM_026385.4Link to Protein Sequence:NP_080661.1Re-query CCDS DB by Nucleotide ID:NM_026385Re-query CCDS DB by Protein ID:NP_080661Link to BLAST:NP_080661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080661.1 182 Q9DCU2 182 100% 0 0

Chromosomal Locations for CCDS 22546.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94676163 94676279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94677226 94677348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94679345 94679518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94696036 94696170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGGCGGAGTTCCCGTCGAAAGTGAGCACGAGGACCAGCAGCCCCGCGCAGGGCGTGGGAGCCTCTGTGT
CTGCGCTGCGACCGGATCTGGGCTTCGTGCGCTCCGCTCTTGGGGTGCTCGCGCTTCTGCAGCTGGCACT
GGGGCTGCTGGTGTGGGCCCTGATTGCTGACACCCCATACCATCTGTATCCTGCCTATGGCTGGGTCATG
TTTGTCGCTGTCTTCCTCTGGCTGGTGACAATCGTCTTCTTCATCATCTACCTGTTTCAACTGCACATGA
AGTTGTACATGGTGCCCTGGCCGTTGGTGTTACTGATCTTTTTTGTCGCTGCCACGGTTCTCTACATTAC
TGCCTTTATCGCCTGTGCAGCGGCGGTCGATCTGACATCCCTGAGGGGCTCCCGGCCATATAACCAGCGC
TCAGCTGCCTCTTTCTTTGCTTGTCTGGTGATGATTGCCTACGGAGTGAGCGCTTTCTTCAGCTTCCAGG
CCTGGCGAGGAGTGGGTAGCAACGCGGCCACGAGTCAGATGGCTGGGGGCTACTCCTAA

Translation (182 aa):
MAEFPSKVSTRTSSPAQGVGASVSALRPDLGFVRSALGVLALLQLALGLLVWALIADTPYHLYPAYGWVM
FVAVFLWLVTIVFFIIYLFQLHMKLYMVPWPLVLLIFFVAATVLYITAFIACAAAVDLTSLRGSRPYNQR
SAASFFACLVMIAYGVSAFFSFQAWRGVGSNAATSQMAGGYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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