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Report for CCDS52065.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52065.1 Public Mus musculus 7 Igsf23 23 108 98 CCDS HistoryNCBI Gene:70080Re-query CCDS DB by CCDS ID:52065.1Re-query CCDS DB by GeneID:70080See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52065.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043440.7 ENSMUSP00000047914.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043440.7Link to Ensembl Protein Viewer:ENSMUSP00000047914.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043440Re-query CCDS DB by Protein ID:ENSMUSP00000047914
Original member Current member NCBI NM_027308.2 NP_081584.1 Accepted alive Link to Nucleotide Sequence:NM_027308.2Link to Protein Sequence:NP_081584.1Re-query CCDS DB by Nucleotide ID:NM_027308Re-query CCDS DB by Protein ID:NP_081584Link to BLAST:NP_081584.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081584.1 239 B2RTN2 239 100% 0 0

Chromosomal Locations for CCDS 52065.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19938245 19938250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19939173 19939342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19941750 19942019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19944704 19944913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19950445 19950508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGAACTGTCTTCGGGACTCAGGCCGTGGCCTCATTCCTGCCTGGGAGACGCTTCTACTAACAGGTGCCC
TGCTCTCCTCCTGTACCTGCTCAGCCACCTCCAAGCTGCCCCAAATGAAAGGAGCCAACACCCAGCTGCC
TGTCCCCGGAGCTCTTGAGAAAGATCTCAGCACTTCTTGGTTCCCAGAGCTTGAAGCCCAGCCGCCAACC
TCATCCTCTCCCAAGGGCCTCCCAGGACGTCCTCGCACTAGCCAAGAGGTGCCGAACGCTGAAGACAATC
CCAGCCTGATCCCACTGGTGACCTTCCCCGAGTCTTCCAAGGGCATAATCTACAGTGACCTTAACTACTC
TGTGATCCTGCAGTGGATGGTGACCATGAACCCAGAGCCTGTGCTGAGCTGGACCTTTGATGGAAAGCCA
TGTGGAACTGGGGAGAAGCTATTTATCCGGCGACTGTCCCCAGATCAGCTGGGCACTTACCTGTGCATAG
CCAGGAACACAGACAAAGAGCTGGTCTCTGAGCCGGTGACTGTCTCATTGAGCCCAGCCACCGGGGCTCC
CACAGTTCCGGCTCCCACAGTTGCCTATCCCATGAAGCCGAACGACTACATGTCGGTCTCAGGAGGATCC
GCCATAGCCCTCATCGTAGCGGCCACCATCGGAGGATTAGTCCTGATCGGATCTGTCTGCTTCTATATAC
TGCTGGCACTTAAGAAATAA

Translation (239 aa):
MNCLRDSGRGLIPAWETLLLTGALLSSCTCSATSKLPQMKGANTQLPVPGALEKDLSTSWFPELEAQPPT
SSSPKGLPGRPRTSQEVPNAEDNPSLIPLVTFPESSKGIIYSDLNYSVILQWMVTMNPEPVLSWTFDGKP
CGTGEKLFIRRLSPDQLGTYLCIARNTDKELVSEPVTVSLSPATGAPTVPAPTVAYPMKPNDYMSVSGGS
AIALIVAATIGGLVLIGSVCFYILLALKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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